genome.fa.s7948.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007948.1 Hibiscus syriacus cultivar Beakdansim tig00110370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  294181

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211419--211456	18	2.1	18	85	9	51	44	5	0	50	1.24
212772--212796	13	1.9	13	100	0	50	60	0	0	40	0.97
217639--217700	31	2.0	31	100	0	124	19	32	9	38	1.84
224237--224294	24	2.4	24	100	0	116	34	3	31	31	1.74
224367--224449	33	2.5	34	92	3	134	32	14	13	39	1.85
225965--226036	27	2.6	28	79	18	87	36	33	0	30	1.58
232938--233120	39	4.8	38	82	6	183	27	19	15	37	1.92
232966--233117	39	4.0	39	87	3	211	26	19	17	36	1.93
232962--233320	36	10.1	36	76	10	258	28	19	13	37	1.90
233058--233249	66	2.9	67	83	4	255	29	19	11	38	1.88
233731--235471	133	13.2	133	88	2	2469	28	20	20	29	1.98
233731--235471	262	6.6	262	92	0	2563	28	20	20	29	1.98
233729--235471	44	39.6	44	67	8	691	28	20	20	29	1.98
235767--235846	28	2.9	26	81	17	92	36	37	0	26	1.57
238401--238429	14	2.1	14	100	0	58	58	0	6	34	1.25
241330--241450	33	3.6	33	94	3	199	28	11	22	38	1.89
246461--246506	20	2.3	20	100	0	92	34	15	17	32	1.91
250973--251327	179	2.0	179	97	0	665	34	23	9	32	1.87
255360--255395	2	18.0	2	100	0	72	50	0	0	50	1.00
256596--256685	41	2.2	41	87	0	126	21	17	44	16	1.87
256617--256709	41	2.3	41	90	0	141	18	18	40	22	1.91
267407--267449	20	2.2	20	86	0	59	2	23	4	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276227--276313	31	2.8	31	89	0	129	37	16	12	33	1.86
276894--276955	31	2.0	31	90	0	97	33	9	14	41	1.79
276898--276966	31	2.2	31	84	5	86	33	8	14	43	1.76
277131--277178	23	2.1	23	84	7	62	56	2	0	41	1.11
279867--279913	21	2.2	22	77	11	53	31	19	12	36	1.89
282852--282876	13	1.9	13	100	0	50	40	0	28	32	1.57
286642--286673	2	16.0	2	100	0	64	50	0	0	50	1.00
290555--290719	43	3.8	42	74	16	122	56	3	13	26	1.54
290887--290967	41	2.0	41	87	0	117	56	1	4	37	1.29
290887--290946	20	2.9	21	71	14	61	60	0	3	36	1.14
291242--291290	25	2.0	25	100	0	98	40	8	12	38	1.72
291774--291798	7	3.6	7	100	0	50	40	0	12	48	1.40
292473--292506	17	2.0	17	94	0	59	50	0	0	50	1.00

Tables:   1   2

The End!