genome.fa.s7954.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007954.1 Hibiscus syriacus cultivar Beakdansim tig00110379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  289567

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184743--184865	42	2.9	41	79	7	113	22	18	36	21	1.95
185083--185267	91	2.0	90	90	6	291	47	18	12	22	1.82
186954--187094	19	7.8	19	73	17	113	43	20	23	12	1.85
186954--187099	33	4.1	37	80	16	130	43	20	23	12	1.86
186962--187099	52	2.6	52	88	2	195	42	21	23	12	1.87
187089--187141	19	2.8	19	85	0	61	13	15	22	49	1.79
187113--187176	34	1.9	34	87	3	94	10	17	21	50	1.77
187693--187764	20	3.5	20	86	5	83	22	20	20	36	1.96
187754--187826	21	3.5	21	75	3	67	36	19	20	23	1.95
187836--187890	20	2.7	21	82	5	67	23	21	14	40	1.90
187877--187929	21	2.5	20	79	8	70	33	18	26	20	1.96
188395--188427	17	2.1	17	88	11	52	63	0	0	36	0.95
188543--188579	19	1.9	19	88	0	56	8	8	5	78	1.09
189988--190040	20	2.7	20	100	0	106	15	20	39	24	1.91
190027--190173	64	2.3	63	87	5	206	29	16	22	31	1.96
191525--191645	57	2.1	57	96	0	224	35	19	15	28	1.93
191624--191664	20	2.0	20	95	0	73	41	19	14	24	1.89
191684--191750	20	3.3	20	83	4	82	20	17	17	43	1.88
197318--197373	19	2.9	19	73	7	60	69	3	3	23	1.20
197482--197539	2	29.0	2	100	0	116	50	0	0	50	1.00
197601--197656	19	2.8	18	78	19	58	66	1	3	28	1.19
199374--199415	20	2.1	20	95	0	75	35	16	21	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199679--200189	105	4.9	105	96	0	925	22	18	24	34	1.96
204951--205195	120	2.0	123	97	2	469	22	30	18	28	1.98
211298--211352	18	3.2	17	74	20	51	70	3	3	21	1.18
211421--211457	11	3.5	11	85	10	51	67	0	8	24	1.17
214770--214809	3	13.3	3	100	0	80	65	0	0	35	0.93
216933--217037	54	1.9	55	88	3	160	33	5	20	40	1.76
228427--228514	31	2.9	31	83	5	99	32	19	18	29	1.95
232693--232780	31	2.9	29	81	11	88	34	19	19	27	1.96
232721--232780	31	1.9	31	93	0	102	33	16	21	28	1.95
234361--234401	18	2.3	18	86	0	55	48	24	12	14	1.78
234414--234453	20	2.0	21	90	5	64	32	25	20	22	1.98
238658--238698	12	3.4	12	82	0	55	29	2	4	63	1.28
244218--244275	30	1.9	30	100	0	116	24	10	13	51	1.72
250863--250908	23	2.0	24	83	12	60	19	0	2	78	0.86
250948--250996	20	2.3	23	79	10	59	12	14	16	57	1.66
251297--251478	60	3.0	60	77	5	179	32	18	5	43	1.72
251618--251792	59	2.9	59	84	7	196	40	5	20	33	1.75
254595--254626	2	16.0	2	100	0	64	50	0	0	50	1.00
254903--254949	20	2.3	20	96	0	85	36	25	19	19	1.95
254957--255070	20	5.7	20	79	7	106	33	23	12	30	1.92
254974--255070	41	2.4	40	86	6	124	32	22	11	32	1.90
255002--255090	20	4.5	19	77	16	74	30	23	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255857--255890	12	2.8	12	90	0	50	55	29	0	14	1.40
256016--256069	24	2.2	24	93	0	90	20	18	20	40	1.91
258330--258364	12	2.9	12	86	0	52	48	28	5	17	1.69
258796--258847	25	2.1	25	88	0	77	30	7	19	42	1.79
259231--259266	18	2.0	18	88	0	54	33	5	11	50	1.61
259223--259275	24	2.2	24	83	6	63	37	3	13	45	1.61
260436--260476	6	6.8	6	94	0	73	63	19	0	17	1.31
260436--260483	12	4.0	12	88	0	69	60	22	0	16	1.36
260700--260734	14	2.6	13	82	8	52	48	25	17	8	1.75
260813--260965	64	2.4	64	91	1	236	51	17	1	28	1.56
260942--260974	13	2.4	14	90	5	50	48	18	0	33	1.48
262300--262405	21	5.0	21	77	4	97	25	18	34	20	1.96
262285--262405	42	2.9	42	87	0	161	23	19	35	20	1.96
262698--262840	63	2.3	63	80	4	155	31	32	12	23	1.92
262811--262860	21	2.4	21	82	0	55	36	26	10	28	1.88
265034--265083	20	2.5	20	90	0	82	16	14	26	44	1.85
265075--265115	21	2.0	21	85	0	55	39	17	21	21	1.93
269183--269368	93	2.0	93	98	0	363	37	12	13	36	1.83
269491--269563	36	2.0	37	94	2	130	52	6	8	32	1.58
274754--274778	2	12.5	2	100	0	50	48	0	0	52	1.00
276964--277004	2	21.0	2	95	5	75	48	0	51	0	1.00
277280--277318	18	2.2	18	86	9	53	20	0	5	74	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277310--277397	38	2.3	38	84	3	106	39	2	9	48	1.47
279405--279452	23	2.1	23	88	0	69	35	12	18	33	1.89
280177--280213	18	2.1	18	89	0	56	51	10	5	32	1.60
280416--280480	23	2.8	23	90	0	94	38	18	7	35	1.80
280832--280885	23	2.5	20	75	18	54	42	18	1	37	1.61
280847--280909	23	2.7	23	90	0	90	38	19	6	36	1.77
280418--281436	429	2.4	431	98	0	1976	38	12	8	40	1.74
281261--281314	23	2.5	20	75	18	54	42	18	1	37	1.61
281276--281338	23	2.7	23	90	0	90	38	19	6	36	1.77
283894--284562	183	3.7	184	97	0	1263	34	15	14	35	1.89
285921--286001	3	27.0	3	78	0	81	24	34	6	34	1.81
285921--286022	18	5.7	18	77	0	78	22	33	6	37	1.81
285929--286019	42	2.2	42	89	0	137	21	34	7	36	1.82
287482--289389	199	9.7	197	95	3	3377	32	14	15	37	1.88

Tables:   1   2

The End!