genome.fa.s7969.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007969.1 Hibiscus syriacus cultivar Beakdansim tig00110406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177975

Tables:   1   2   

This is table  1  of  2  ( 147 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23140--23202	18	3.3	19	79	18	76	58	0	0	41	0.98
23149--23225	16	5.0	14	72	18	55	58	1	2	37	1.20
23130--23202	26	3.0	25	71	11	62	61	0	0	38	0.96
29427--29462	2	18.0	2	100	0	72	50	0	0	50	1.00
29858--30164	122	2.5	122	80	3	325	43	7	14	33	1.74
29947--30163	121	1.8	119	83	4	292	45	7	16	30	1.75
29948--30272	119	2.7	120	80	6	320	45	7	16	31	1.73
30019--30303	119	2.4	119	78	7	283	48	5	15	30	1.69
35495--35652	21	7.8	20	70	7	77	37	24	17	19	1.93
35620--35814	20	9.6	20	78	4	122	35	25	19	18	1.95
35620--35813	61	3.2	61	82	2	248	35	25	19	19	1.95
35620--35814	81	2.4	80	83	4	239	35	25	19	18	1.95
35659--35811	41	3.8	41	85	3	211	33	25	19	20	1.96
36195--36265	33	2.2	33	92	0	115	12	21	16	49	1.79
36397--36441	19	2.4	19	92	0	72	46	26	17	8	1.78
36437--36567	19	7.7	19	70	23	103	9	24	22	43	1.83
36459--36581	14	7.7	14	72	24	93	8	25	22	43	1.82
36442--36589	33	4.5	33	96	0	278	9	24	20	45	1.81
38284--38661	92	4.1	93	98	1	726	22	12	18	46	1.82
38705--38781	19	4.3	19	76	17	83	45	29	15	9	1.77
38777--38895	19	6.8	18	72	19	101	9	19	24	47	1.78
38799--38855	14	3.7	14	72	20	51	8	19	26	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38782--38874	33	2.8	33	88	0	150	9	19	23	47	1.79
38777--38911	19	7.6	19	72	20	96	10	18	25	45	1.81
40807--40842	14	2.6	14	95	0	63	33	0	22	44	1.53
40949--41007	19	3.4	19	68	22	65	47	18	20	13	1.82
40949--41025	33	2.3	33	97	0	145	44	19	23	12	1.85
41054--41447	19	22.4	19	78	18	444	13	21	18	46	1.83
41032--41447	52	7.9	51	79	15	347	14	21	18	46	1.84
41073--41447	34	10.8	33	84	10	348	13	21	18	46	1.83
41373--41433	14	3.9	14	75	22	59	14	16	19	49	1.80
43728--43752	12	2.1	12	100	0	50	0	28	0	72	0.86
43926--43972	24	2.0	24	87	8	69	38	21	14	25	1.92
44648--45038	20	19.5	20	84	6	450	20	18	25	35	1.95
44653--45057	81	5.0	81	82	6	398	21	18	25	34	1.96
50366--50418	21	2.5	21	81	6	72	20	26	18	33	1.96
50393--50516	41	3.0	42	82	2	99	35	18	20	25	1.95
50408--50516	21	5.3	21	82	7	134	37	17	22	22	1.94
50448--50577	41	3.2	41	86	4	165	34	23	20	22	1.97
50510--50618	20	5.4	20	78	6	85	31	29	14	24	1.95
50425--50562	62	2.2	63	77	11	142	36	21	21	21	1.95
50466--50644	41	4.4	41	77	2	155	34	24	16	24	1.95
50466--50644	81	2.2	81	83	5	218	34	24	16	24	1.95
50812--50854	22	2.0	22	90	0	68	20	41	16	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51134--51176	20	2.2	20	95	0	77	9	18	18	53	1.70
52497--52544	18	2.7	18	93	0	87	27	45	12	14	1.81
53091--53157	20	3.4	20	81	2	73	38	23	22	14	1.92
53219--53305	20	4.4	20	86	1	113	14	24	22	37	1.92
53276--53331	20	2.8	20	88	0	76	23	16	28	32	1.96
53232--53325	40	2.4	40	82	5	102	18	21	24	36	1.95
53670--53759	40	2.2	42	82	4	112	23	38	14	23	1.91
55169--55207	14	2.8	14	84	0	51	35	0	17	46	1.49
55334--55387	14	3.5	14	77	22	63	48	20	20	11	1.80
55420--55486	20	3.3	20	73	8	64	16	20	20	41	1.90
55699--55747	20	2.5	20	73	3	55	20	18	24	36	1.94
55775--55826	20	2.5	21	87	3	70	21	23	17	38	1.93
58279--58583	149	2.0	149	98	0	592	27	16	21	34	1.95
58562--58606	23	2.0	23	86	0	63	20	24	28	26	1.99
61865--61909	21	2.1	21	87	0	63	33	26	22	17	1.96
63384--63688	149	2.0	149	97	0	574	28	16	20	34	1.94
63667--63711	23	2.0	23	86	0	63	20	24	28	26	1.99
64912--64965	24	2.2	24	86	0	72	24	14	18	42	1.88
65140--65164	12	2.1	12	100	0	50	72	0	28	0	0.86
67450--67514	19	3.7	19	70	19	68	43	20	24	12	1.86
67510--67551	19	2.2	19	91	0	66	16	19	23	40	1.91
67519--67585	19	3.8	19	75	18	81	11	22	20	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67692--67728	14	2.6	14	91	0	65	45	24	0	29	1.53
69077--69143	21	3.2	21	68	4	55	19	20	35	23	1.95
69077--69185	42	2.6	41	81	5	103	22	20	33	22	1.97
71218--71273	14	3.6	14	74	21	58	39	25	25	10	1.87
71194--71292	33	3.0	33	95	1	171	40	23	25	11	1.87
71169--71366	19	11.1	18	70	19	123	42	20	23	12	1.86
71231--71361	52	2.5	52	92	0	217	43	22	22	12	1.86
71177--71344	85	2.0	87	89	2	259	41	22	23	12	1.87
71959--72016	21	2.8	20	89	2	80	18	20	18	41	1.91
71941--72016	20	3.8	20	81	6	82	21	19	21	38	1.94
71933--72150	41	5.3	41	70	11	124	29	17	20	32	1.96
72128--72178	21	2.4	22	80	6	70	37	17	25	19	1.94
71943--72199	123	2.1	123	84	5	324	30	17	21	30	1.96
88141--88178	20	1.9	20	88	0	58	52	15	15	15	1.75
89940--89999	21	3.2	21	65	30	62	31	5	20	43	1.73
89932--90051	35	3.3	36	87	6	172	32	5	19	43	1.72
89905--90048	72	2.1	69	84	7	184	33	6	18	41	1.76
94459--94519	21	3.2	21	65	29	64	31	4	21	42	1.74
94451--94569	35	3.3	37	88	8	174	31	5	19	43	1.72
100415--100485	25	2.9	24	82	2	88	21	26	23	28	1.99
100440--100528	24	3.7	23	79	11	76	17	25	24	31	1.97
101276--101363	23	3.8	23	87	0	113	32	23	23	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101376--101698	103	3.1	103	98	0	610	37	23	13	25	1.92
102038--102073	2	18.0	2	100	0	72	50	0	0	50	1.00
103091--103167	24	3.4	23	91	7	106	27	22	18	32	1.97
103107--103167	24	2.5	24	100	0	122	24	21	19	34	1.96
103155--103295	64	2.2	63	81	7	160	26	24	17	32	1.96
106478--106514	19	1.9	19	94	0	65	62	0	2	35	1.10
106558--106593	15	2.5	15	90	4	56	33	0	0	66	0.92
106561--106593	16	2.1	15	94	5	57	30	0	0	69	0.88
110059--110089	14	2.2	14	94	0	53	58	0	0	41	0.98
110801--110874	29	2.4	30	91	6	114	44	35	8	12	1.71
111041--111115	32	2.3	31	90	4	105	42	34	10	12	1.77
124890--124938	23	2.2	22	81	3	53	57	4	8	30	1.47
125437--125469	12	2.6	13	85	9	50	69	3	0	27	1.03
129827--130039	103	2.1	103	91	0	345	25	13	23	37	1.92
130063--130123	23	2.7	23	86	0	77	21	21	26	31	1.98
134423--134469	19	2.5	19	100	0	94	29	21	25	23	1.99
135284--135496	103	2.1	103	90	0	336	25	14	23	36	1.93
135521--135580	23	2.6	23	89	0	84	21	15	26	36	1.93
136434--136490	28	2.0	29	82	3	71	29	3	22	43	1.70
137980--138019	14	2.9	14	85	7	55	82	5	5	7	0.94
142073--142229	78	2.0	78	92	0	260	40	7	19	32	1.80
145240--145301	24	2.6	24	68	0	61	50	17	19	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146614--147215	209	2.8	211	90	4	948	50	8	11	29	1.67
147254--147311	22	2.8	21	77	15	66	43	5	8	43	1.57
147329--147389	27	2.2	27	91	2	95	49	6	3	40	1.45
147250--147559	20	15.2	20	67	20	101	44	5	5	44	1.50
147504--147569	13	5.3	13	70	14	50	43	0	6	50	1.27
147609--147646	20	1.9	20	94	0	67	39	10	0	50	1.37
147636--147727	33	2.9	33	85	6	120	41	6	5	46	1.52
147612--147684	20	3.4	20	75	17	65	38	8	2	50	1.47
147757--147798	20	2.1	20	86	8	59	42	9	4	42	1.58
147744--147818	38	2.0	38	86	5	107	40	8	9	42	1.66

Tables:   1   2