genome.fa.s7969.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007969.1 Hibiscus syriacus cultivar Beakdansim tig00110406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177975

Tables:   1   2   

This is table  2  of  2  ( 147 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147744--147813	18	3.8	18	78	14	79	40	8	8	42	1.66
147899--147969	20	3.5	20	81	9	74	43	7	2	46	1.45
147826--147962	51	2.6	52	88	8	197	40	9	5	45	1.59
148030--148175	18	8.1	18	72	19	119	45	6	6	41	1.54
148010--148178	51	3.2	51	86	12	259	44	5	5	43	1.52
148010--148166	57	2.9	55	89	9	243	43	5	6	43	1.53
148094--148164	33	2.2	33	85	7	92	45	5	7	42	1.55
151031--151077	14	3.7	14	71	26	50	51	4	0	44	1.21
151029--151078	23	2.1	24	96	3	93	48	4	0	48	1.20
151328--151378	16	3.2	16	91	0	84	39	13	27	19	1.90
157584--157771	65	2.9	64	82	9	190	29	17	23	29	1.97
157606--157791	65	2.9	64	82	8	198	29	16	23	30	1.96
159338--159604	43	6.0	45	88	6	386	31	20	7	40	1.79
159354--159604	88	2.9	88	92	3	409	30	20	7	41	1.80
159709--159910	40	5.1	40	90	0	314	33	26	15	23	1.95
160701--160731	11	2.8	11	100	0	62	45	25	0	29	1.54
161596--161654	30	2.0	30	83	6	75	35	18	5	40	1.73
163428--163513	25	3.4	23	77	15	66	4	15	2	77	1.02
163445--163527	25	3.3	25	75	14	82	4	13	3	78	1.05
163435--163510	34	2.3	33	80	13	84	3	14	2	78	1.00
163437--163522	13	6.5	13	74	12	59	3	13	3	79	1.00
163445--163525	19	4.3	18	73	22	60	3	13	3	79	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166182--166432	43	5.7	45	87	6	361	30	19	7	41	1.80
166182--166432	88	2.9	88	91	2	398	30	19	7	41	1.80
166537--166698	40	4.1	40	89	0	252	33	25	16	24	1.95
168329--168419	30	3.1	29	78	10	85	34	16	7	41	1.77
176823--176856	16	2.1	16	94	0	59	32	26	8	32	1.87

Tables:   1   2

The End!