genome.fa.s7971.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007971.1 Hibiscus syriacus cultivar Beakdansim tig00110408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  346037

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213416--213457	22	1.9	22	85	9	59	35	0	33	30	1.58
215033--215122	32	2.9	30	88	8	126	24	18	24	32	1.97
215031--215127	31	3.1	31	89	1	140	23	17	26	31	1.97
215110--215163	22	2.4	23	78	9	67	22	18	33	25	1.97
222733--222847	55	2.1	56	91	3	187	45	8	18	27	1.79
224867--225005	59	2.4	59	80	10	142	37	14	12	35	1.85
235485--235522	20	1.9	20	88	0	58	13	26	36	23	1.91
239289--239328	21	1.9	21	85	10	55	35	10	2	52	1.48
242271--242309	20	1.9	21	89	5	62	30	12	28	28	1.93
244898--244928	16	1.9	16	93	0	53	67	6	3	22	1.28
246985--247047	21	3.0	20	78	17	58	49	4	14	31	1.64
257013--257262	43	5.8	43	94	0	430	30	24	29	16	1.97
260145--260193	22	2.2	23	85	10	66	51	28	0	20	1.48
262084--262375	43	6.8	44	91	5	422	31	23	27	16	1.96
262066--262375	129	2.4	128	90	3	471	32	22	26	17	1.97
266084--266118	9	3.9	9	100	0	70	22	0	0	77	0.78
269905--269957	23	2.2	24	80	6	63	15	11	11	62	1.55
268629--270518	955	2.0	940	92	1	3168	30	13	19	36	1.90
273574--273614	18	2.3	18	86	0	55	12	4	2	80	0.97
275914--275956	11	3.7	11	81	9	50	25	9	9	55	1.61
275914--275957	12	3.8	12	81	6	54	25	9	9	56	1.59
277143--277178	18	2.0	18	94	0	63	22	22	13	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282037--282075	7	5.6	7	90	0	60	23	0	30	46	1.53
282037--282174	14	9.9	14	71	13	72	25	0	28	44	1.59
282037--282110	21	3.5	21	74	17	73	24	0	29	45	1.53
282051--282147	35	2.8	35	88	0	140	25	1	27	45	1.60
282116--282174	21	2.8	21	75	17	59	25	1	28	44	1.64
282121--282181	21	2.9	21	75	18	56	24	1	27	45	1.62
282169--282297	58	2.2	59	90	5	208	27	3	24	45	1.68
282266--282307	15	2.8	15	89	7	59	26	0	26	47	1.52
284213--284313	11	8.9	11	72	8	69	29	22	22	24	1.99
284233--284299	12	5.8	12	75	7	66	32	25	20	20	1.97
284224--284310	23	3.8	23	89	0	129	29	24	21	24	1.99
287361--287387	7	3.9	7	100	0	54	14	14	14	55	1.70
287496--287532	16	2.2	18	85	9	51	56	5	8	29	1.51
293081--293126	12	3.6	12	81	16	56	45	17	19	17	1.85
293087--293127	12	3.1	13	80	19	57	46	14	17	21	1.84
295417--295456	21	1.9	21	94	0	71	30	15	7	47	1.72
295451--295549	33	3.0	33	94	1	164	32	7	15	45	1.73
295535--295589	13	4.2	13	75	13	58	34	3	12	49	1.59
295985--296023	15	2.6	15	87	0	60	28	12	12	46	1.79
296114--296145	16	2.0	17	88	11	50	43	21	21	12	1.86
298538--298584	21	2.2	21	85	7	60	40	0	2	57	1.11
302879--302909	4	7.8	4	92	0	53	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303976--304009	17	2.0	17	100	0	68	47	0	5	47	1.26
303986--304083	51	1.9	50	89	6	153	41	3	4	51	1.36
304908--304951	20	2.2	20	95	0	79	63	13	13	9	1.51
307302--307481	51	3.6	49	81	13	186	41	6	7	45	1.56
307422--307609	33	5.5	33	84	10	236	42	5	6	45	1.54
307328--307528	33	7.2	27	70	22	86	41	6	7	44	1.58
307646--307759	7	17.7	6	76	13	61	47	3	6	42	1.45
307646--307772	20	6.3	20	73	16	95	47	3	7	42	1.46
307791--307842	20	2.7	20	88	5	81	38	7	9	44	1.66
307826--307959	33	4.2	33	78	11	109	54	2	5	37	1.38
307787--307852	18	3.6	17	72	10	51	40	6	9	43	1.61
307787--307854	20	3.5	19	69	16	59	41	5	8	44	1.60
307826--307932	33	3.3	33	82	10	123	51	2	6	39	1.43
307904--307958	6	9.2	6	100	0	110	67	0	0	32	0.91
307978--308292	20	15.4	20	67	18	114	45	6	3	45	1.44
308070--308309	22	11.3	22	66	18	86	43	5	4	46	1.47
308026--308105	9	7.8	10	70	22	51	47	2	2	47	1.29
308179--308306	2	63.5	2	73	13	102	46	3	2	46	1.33
308203--308306	9	11.0	9	72	14	68	47	3	1	47	1.31
308460--309138	217	3.1	217	92	1	1116	28	12	8	50	1.69
308460--309277	433	1.9	429	80	8	942	31	12	8	48	1.70
314007--314044	19	2.0	19	89	0	58	47	10	0	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315577--315629	23	2.3	23	86	0	79	28	26	22	22	1.99
315623--315671	21	2.3	21	89	6	73	32	26	18	22	1.97
316218--316357	53	2.7	51	86	6	176	29	24	18	27	1.98
316322--316404	21	4.0	21	70	14	55	26	30	13	30	1.94
322574--322622	21	2.3	21	89	6	73	30	28	16	24	1.96
323132--323271	53	2.6	54	83	5	160	29	22	19	29	1.98
330590--330643	10	5.2	10	82	6	54	83	7	7	1	0.88
330590--330623	11	3.1	11	91	0	50	85	8	5	0	0.75
330594--330634	11	3.8	11	87	6	57	80	9	9	0	0.91
338905--338936	13	2.4	14	90	10	50	12	0	6	81	0.87
339224--339271	19	2.5	19	83	6	62	18	16	0	64	1.29

Tables:   1   2

The End!