genome.fa.s7976.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007976.1 Hibiscus syriacus cultivar Beakdansim tig00110413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  428971

Tables:   1   2   3   

This is table  2  of  3  ( 243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146187--146235	12	4.2	12	76	2	55	34	8	2	55	1.41
146228--146274	21	2.2	21	77	7	51	40	2	0	57	1.11
162386--162827	220	2.0	220	97	0	832	39	14	11	33	1.83
167516--167559	23	1.9	23	86	9	63	56	0	6	36	1.26
167891--168138	2	127.0	2	81	10	273	45	2	4	47	1.34
168156--168190	11	3.2	11	91	0	61	28	5	25	40	1.78
168163--168219	4	14.8	4	87	7	73	29	1	22	45	1.63
168163--168237	39	1.9	38	86	2	105	33	6	17	42	1.75
168277--168384	2	56.0	2	66	20	52	48	2	5	43	1.41
168278--168369	35	2.7	35	86	6	109	47	3	5	43	1.42
182921--182960	21	1.9	21	94	0	71	60	0	0	40	0.97
188844--188886	21	2.0	21	90	0	68	37	16	16	30	1.91
189455--189537	42	2.0	42	97	0	157	36	20	13	30	1.91
194755--194793	20	1.9	21	89	5	62	53	0	0	46	1.00
196074--196132	12	5.1	12	81	8	68	59	1	0	38	1.08
196074--196131	22	2.7	22	84	5	75	58	1	0	39	1.08
210109--210140	2	16.0	2	100	0	64	50	0	0	50	1.00
223298--223364	2	34.0	2	90	3	109	52	0	0	47	1.00
237034--237078	23	2.0	23	95	0	81	37	4	24	33	1.76
250216--250264	19	2.6	19	84	9	57	24	28	20	26	1.99
250085--250264	65	2.8	64	81	10	197	29	23	19	27	1.98
257632--257670	19	2.1	19	85	4	53	7	43	15	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258758--258933	64	2.8	63	78	13	193	29	23	19	27	1.98
258879--258914	18	2.1	18	89	5	56	33	22	16	27	1.95
263535--263587	21	2.5	21	84	0	70	20	26	18	33	1.96
263577--263688	20	5.6	20	89	2	161	37	21	21	19	1.94
263562--263689	41	3.1	41	84	2	168	35	21	20	23	1.96
264238--264313	18	3.8	20	77	13	77	52	19	17	10	1.73
264238--264313	21	3.9	21	78	13	74	52	19	17	10	1.73
264320--264406	19	5.1	18	67	23	64	11	22	18	47	1.81
264342--264398	14	3.7	14	70	20	51	10	22	21	45	1.82
264325--264406	33	2.5	33	93	0	146	10	21	18	48	1.78
266092--266465	94	4.1	93	94	3	616	21	12	19	46	1.82
266558--266619	20	3.2	20	81	4	90	50	16	22	11	1.76
266561--266618	19	3.0	20	82	5	82	50	17	24	8	1.74
266601--266639	14	2.8	14	88	0	60	48	25	17	7	1.74
266629--266666	20	1.9	20	94	0	67	50	28	13	7	1.69
266672--266766	19	4.8	19	79	7	100	11	21	20	47	1.81
266675--266766	40	2.3	40	84	3	114	11	20	19	47	1.81
267216--267282	21	3.2	21	66	6	55	23	35	20	19	1.95
268634--268665	14	2.3	14	94	0	55	34	0	21	43	1.53
268843--268941	19	5.7	19	64	22	65	11	23	19	46	1.81
268847--268963	33	3.5	33	95	0	207	11	23	17	47	1.80
268868--268955	14	5.6	14	67	23	50	11	23	19	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271135--271297	20	8.0	21	79	4	147	30	20	17	32	1.95
271190--271282	41	2.3	41	92	0	150	24	21	16	37	1.93
271135--271297	41	4.0	41	76	8	109	30	20	17	32	1.95
271279--271324	21	2.2	21	88	0	65	36	17	28	17	1.92
282756--282882	60	2.1	59	80	2	137	37	17	14	30	1.90
286892--286927	18	2.1	17	89	5	54	63	0	27	8	1.23
288478--288517	19	2.1	19	85	0	53	60	0	0	40	0.97
289333--289363	14	2.2	14	94	0	53	61	6	0	32	1.21
289539--289637	7	13.6	7	67	19	51	66	3	1	29	1.13
289555--289603	21	2.3	21	85	3	62	67	4	0	28	1.09
289536--289639	15	7.1	15	69	16	58	67	2	0	28	1.11
291124--291174	20	2.5	21	77	3	59	68	3	0	27	1.07
291691--291737	10	4.7	10	79	10	51	29	0	0	70	0.88
291992--292063	36	2.0	36	100	0	144	36	22	27	13	1.92
297985--298067	43	1.9	43	90	0	130	32	28	16	21	1.96
298209--298420	116	1.8	116	92	2	363	31	25	19	23	1.98
298586--298665	21	4.0	21	75	20	91	28	22	11	37	1.89
298604--298976	36	11.3	36	79	12	253	29	20	12	37	1.90
298836--298945	27	4.1	27	98	1	213	32	18	15	33	1.92
298889--299048	66	2.5	64	86	8	209	30	18	13	38	1.88
298990--299080	37	2.5	37	96	0	164	30	19	10	38	1.87
299119--299290	84	2.0	84	87	2	247	31	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302732--302987	137	1.9	138	94	0	460	27	13	17	41	1.87
311007--311043	20	1.9	19	89	10	58	45	10	24	18	1.81
311935--312077	36	4.0	36	74	8	130	44	10	17	27	1.82
311931--312090	72	2.2	72	83	7	200	45	10	17	26	1.80
316130--316164	17	2.1	17	100	0	70	22	17	22	37	1.94
318302--318345	18	2.4	18	100	0	88	25	11	20	43	1.85
319571--319674	21	5.1	19	78	8	82	15	26	36	21	1.93
319587--319664	21	3.8	20	83	6	102	14	23	38	24	1.91
319571--319674	41	2.5	41	90	1	154	15	26	36	21	1.93
321067--321114	19	2.5	20	82	3	62	29	12	6	52	1.63
322341--322464	21	6.1	20	79	6	133	14	25	38	20	1.91
322341--322464	40	3.0	41	88	2	187	14	25	38	20	1.91
322341--322464	41	3.0	40	82	11	162	14	25	38	20	1.91
331063--331091	13	2.2	13	100	0	58	34	6	31	27	1.83
339141--339178	20	1.9	20	100	0	76	42	21	15	21	1.89
344305--344346	19	2.2	19	86	0	57	33	26	9	30	1.88
344340--344381	20	2.1	20	86	0	57	28	28	9	33	1.88
344407--344538	20	6.6	20	87	0	174	29	25	15	29	1.96
344556--344644	40	2.2	40	84	7	110	31	20	11	37	1.88
344557--344665	20	5.6	20	70	14	75	30	21	11	37	1.88
345588--345641	24	2.2	24	83	0	72	18	18	18	44	1.87
349502--349604	49	2.1	49	87	0	152	33	16	21	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349608--349652	20	2.2	20	84	7	56	20	13	24	42	1.87
351166--351201	17	2.1	17	94	0	63	22	16	38	22	1.93
351136--351227	21	4.6	21	75	17	97	23	19	35	20	1.95
351526--351686	21	7.7	21	69	8	85	33	34	12	19	1.90
351801--351899	42	2.4	42	89	3	146	19	20	34	26	1.96
353381--353475	20	4.8	20	97	0	172	13	18	22	45	1.85
354002--354041	15	2.7	15	100	0	80	20	17	20	42	1.89
360891--361105	107	2.0	107	92	0	358	46	15	9	28	1.77
362194--362247	24	2.2	24	93	0	90	25	38	1	33	1.67
365448--365474	14	1.9	14	100	0	54	29	7	14	48	1.71
367299--367376	24	3.2	24	94	0	129	26	38	2	32	1.70
370131--370181	23	2.1	25	82	13	63	47	3	1	47	1.32
376214--376350	30	4.6	30	83	1	150	16	12	8	62	1.53
376214--376380	60	2.7	61	84	8	196	15	11	8	63	1.51
376351--376398	25	2.0	25	87	4	71	14	16	8	60	1.57
378778--378806	14	2.0	15	93	6	51	20	13	13	51	1.75
380082--380161	13	5.7	14	76	22	71	78	3	15	2	0.99
380077--380162	27	3.1	27	81	15	88	79	3	15	2	0.98
380110--380173	16	3.8	16	74	22	51	81	1	12	4	0.92
381402--381681	66	4.3	67	77	10	228	29	16	12	41	1.85
381464--381615	62	2.4	64	85	7	202	28	13	15	42	1.84
381626--381732	51	2.1	51	91	3	171	25	24	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381887--381995	48	2.3	48	86	0	146	27	29	14	28	1.95
382381--382410	3	10.0	3	100	0	60	33	0	0	66	0.92
383807--383965	30	5.3	30	81	1	203	16	13	8	60	1.58
383807--383965	59	2.7	59	85	1	219	16	13	8	60	1.58
383807--383981	89	2.0	90	84	5	230	17	13	8	60	1.57
392504--392556	21	2.5	21	85	11	81	24	16	9	49	1.76
409639--409684	20	2.4	19	88	3	65	50	2	0	47	1.13
411553--411587	2	17.5	2	100	0	70	48	0	0	51	1.00
423653--423940	149	2.0	139	83	9	359	45	9	13	32	1.74
425573--425604	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3