genome.fa.s7988.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007988.1 Hibiscus syriacus cultivar Beakdansim tig00110435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  847207

Tables:   1   2   3   4   

This is table  4  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710380--710517	41	3.4	41	77	2	152	23	16	25	34	1.95
710400--710513	20	5.7	20	76	6	95	23	17	27	31	1.97
710508--710700	21	9.3	21	89	3	284	23	21	16	38	1.92
710508--710743	83	2.8	83	82	3	206	25	20	17	36	1.94
711617--711657	16	2.6	16	92	3	66	31	21	9	36	1.86
721674--721721	17	2.8	17	81	9	53	33	0	8	58	1.28
721680--721735	27	2.1	27	83	6	69	37	0	8	53	1.32
722576--722639	28	2.2	29	83	8	78	54	4	14	26	1.59
725120--725175	22	2.5	22	85	0	67	48	17	0	33	1.48
729542--729596	27	2.0	27	96	0	101	52	14	20	12	1.73
745580--745721	63	2.2	63	91	1	221	43	5	8	42	1.58
745580--745744	63	2.6	63	86	5	190	44	4	8	42	1.56
746273--746387	60	1.9	60	85	0	158	28	25	14	31	1.95
748168--748195	3	9.3	3	100	0	56	32	35	0	32	1.58
749885--749934	17	3.0	17	80	11	59	26	24	6	44	1.76
755409--755502	24	3.9	24	97	0	170	41	13	12	31	1.83
759695--759736	15	2.8	15	96	0	75	35	2	21	40	1.66
759695--759752	29	2.0	30	86	3	82	37	5	20	36	1.75
759701--759752	15	3.5	15	86	5	52	38	5	19	36	1.76
759735--759784	20	2.5	20	96	0	91	42	8	16	34	1.77
759881--759979	49	2.0	50	80	9	114	47	2	0	50	1.12
759929--760098	88	1.9	86	81	9	200	45	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760067--760130	23	2.7	24	83	9	69	45	1	3	50	1.27
760114--760217	29	3.5	29	79	19	101	52	1	0	45	1.11
760167--760270	30	3.5	30	76	17	101	50	0	0	48	1.14
760230--760289	21	2.8	22	82	9	72	53	0	0	46	1.00
760118--760280	30	5.9	28	67	25	82	51	1	0	46	1.13
760235--760288	10	5.2	11	73	10	51	53	0	0	46	1.00
760228--760302	30	2.5	31	81	12	77	52	0	0	48	1.00
760479--760596	41	2.8	42	88	2	175	49	16	15	18	1.80
769520--769544	2	12.5	2	100	0	50	52	0	0	48	1.00
772920--773206	108	2.7	108	84	3	355	39	10	12	37	1.78
773920--774228	76	4.1	75	87	4	433	29	14	12	43	1.82
773920--774228	150	2.0	151	89	1	467	29	14	12	43	1.82
774146--774330	100	1.9	100	87	0	271	32	13	11	42	1.80
774368--774407	21	1.9	21	94	0	71	37	7	22	32	1.82
774813--775040	100	2.3	99	89	0	348	38	13	13	35	1.83
775056--775352	144	2.1	144	82	3	348	37	15	10	37	1.82
775717--776335	144	4.3	143	83	2	713	36	10	13	39	1.80
775717--776335	289	2.1	289	84	2	780	36	10	13	39	1.80
777122--777160	10	3.8	10	81	18	53	58	10	10	20	1.59
777207--777249	22	2.0	21	86	13	61	25	32	23	18	1.97
777979--778013	18	1.9	18	94	0	61	22	34	22	20	1.97
783450--783548	21	5.0	21	77	10	102	24	31	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789009--789147	75	1.9	75	92	0	233	28	16	16	38	1.91
792178--792207	13	2.3	13	100	0	60	13	13	0	73	1.10
792303--792397	20	4.9	19	73	10	86	24	22	14	38	1.91
792303--792392	37	2.3	38	84	5	119	22	23	15	38	1.92
793238--793302	26	2.5	25	83	14	78	26	16	3	53	1.58
802953--803004	2	26.0	2	100	0	104	50	0	0	50	1.00
803289--803317	13	2.2	13	100	0	58	68	0	0	31	0.89
808266--808312	14	3.4	14	93	0	85	23	14	27	34	1.94
809367--809697	162	2.0	163	98	0	646	30	18	22	27	1.97
814817--814924	36	3.0	36	83	2	137	22	29	22	25	1.99
821168--821200	2	16.5	2	100	0	66	48	0	0	51	1.00
842943--842994	21	2.6	19	78	6	59	21	17	23	38	1.93
843580--843606	6	4.5	6	100	0	54	0	14	51	33	1.43
843705--843768	19	3.2	19	70	12	65	40	18	20	20	1.91
844022--844054	2	16.5	2	100	0	66	51	0	0	48	1.00
845166--845221	24	2.3	24	100	0	112	16	25	30	28	1.96

Tables:   1   2   3   4

The End!