genome.fa.s7989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007989.1 Hibiscus syriacus cultivar Beakdansim tig00110437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510264

Tables:   1   2   

This is table  1  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12815--12866	21	2.6	19	78	6	59	21	17	23	38	1.93
13462--13488	6	4.5	6	100	0	54	0	14	51	33	1.43
13588--13651	19	3.2	19	70	12	65	40	18	20	20	1.91
13643--13683	21	2.0	21	85	0	55	34	29	17	19	1.94
13910--13940	2	15.5	2	100	0	62	51	0	0	48	1.00
15078--15133	24	2.3	24	100	0	112	16	25	30	28	1.96
18168--18213	20	2.3	20	88	3	67	47	4	0	47	1.21
21581--21627	24	2.0	24	91	0	76	19	6	10	63	1.47
22063--22561	131	3.8	130	86	2	669	33	12	15	38	1.84
22088--22561	261	1.8	262	87	1	718	33	12	15	38	1.85
37099--37156	27	2.1	27	96	0	107	31	25	20	22	1.98
37106--37163	27	2.1	27	90	0	89	32	25	17	24	1.96
39328--39375	21	2.3	21	85	0	60	25	39	12	22	1.89
39379--39472	21	4.5	21	92	5	129	18	35	26	20	1.95
39996--40092	33	2.9	34	85	3	133	55	4	3	37	1.35
39994--40099	34	3.2	33	82	8	133	54	4	2	37	1.36
40495--41121	128	4.9	128	96	0	1164	32	19	25	22	1.97
40496--41121	257	2.4	256	98	0	1198	32	19	25	22	1.97
41192--41230	8	5.0	8	81	6	53	38	28	0	33	1.57
45210--45238	2	14.5	2	100	0	58	48	0	0	51	1.00
45260--45436	37	4.8	37	87	6	234	49	2	3	44	1.33
45260--45435	38	4.7	37	86	9	209	48	2	3	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45260--45495	73	3.2	71	82	8	201	47	2	4	44	1.37
45308--45527	71	3.1	69	70	19	157	45	3	6	44	1.45
46626--46681	27	2.2	25	77	20	62	26	1	5	66	1.23
46735--46834	17	5.8	17	71	18	64	20	5	2	73	1.12
46725--46813	21	4.1	21	72	14	58	21	4	1	73	1.08
46724--46800	39	2.0	40	84	7	104	22	3	1	72	1.08
46763--46816	27	2.1	24	83	10	63	16	5	1	75	1.07
46792--46833	17	2.7	15	92	7	66	11	7	2	78	1.04
47385--47433	18	2.7	18	76	23	50	22	12	2	63	1.39
49175--49816	150	4.3	148	86	5	815	37	14	15	31	1.88
58008--58037	9	3.2	9	95	4	51	46	0	0	53	1.00
58141--58173	10	3.4	10	87	4	50	27	0	9	63	1.24
58964--58990	2	13.5	2	100	0	54	51	0	0	48	1.00
61769--61891	47	2.5	48	83	12	144	43	8	3	44	1.50
61886--61920	2	18.0	2	94	5	63	48	0	0	51	1.00
74427--74463	17	2.1	18	90	5	58	83	5	10	0	0.79
75495--75938	65	6.8	65	92	2	703	33	25	20	20	1.97
88491--88529	14	2.7	15	88	4	53	28	0	0	71	0.86
88554--88580	4	6.8	4	100	0	54	22	0	0	77	0.76
88704--88758	2	27.5	2	78	7	58	40	1	0	58	1.09
88694--88763	36	2.0	35	88	2	104	37	1	0	61	1.05
88637--88780	42	3.6	40	70	16	129	31	2	1	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88769--88951	5	36.6	5	69	23	52	19	6	0	74	1.01
88772--88819	17	2.8	17	84	9	62	16	2	0	81	0.79
88694--88821	4	31.2	4	74	16	57	28	2	0	69	1.01
88694--88821	25	5.2	25	68	18	72	28	2	0	69	1.01
88723--88818	21	4.8	21	68	21	64	25	2	0	72	0.95
88731--88879	71	2.1	71	81	7	169	24	4	0	71	1.04
88681--88935	115	2.2	118	78	13	258	24	5	0	69	1.12
88876--88949	25	3.2	25	77	14	77	17	8	0	74	1.05
93052--93092	16	2.6	16	88	3	57	36	12	21	29	1.90
97942--98009	26	2.7	26	80	15	70	66	1	2	29	1.15
101161--101198	14	2.7	14	87	0	58	23	39	28	7	1.83
101254--101359	29	3.7	29	98	0	203	23	27	34	14	1.93
111401--111452	20	2.6	20	90	0	77	9	21	25	44	1.82
111437--111515	22	3.7	22	70	13	76	18	18	24	37	1.94
111445--111533	41	2.2	41	97	0	169	20	19	22	38	1.94
111465--111533	19	3.5	19	71	11	66	20	20	20	39	1.93
111602--111670	19	3.5	19	67	11	57	18	18	21	40	1.91
111582--111670	41	2.2	41	91	0	151	19	17	23	39	1.92
111396--111674	137	2.0	136	91	0	450	20	18	22	37	1.94
111582--111652	22	3.4	21	69	11	65	18	18	25	38	1.93
111765--111803	6	6.7	6	97	2	71	30	51	17	0	1.46
112431--112585	20	7.6	20	79	2	130	38	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112454--112544	41	2.2	41	98	0	173	37	24	20	17	1.94
112471--112606	21	6.6	21	76	3	141	34	25	18	21	1.96
112404--112585	61	3.0	61	87	4	242	37	21	20	19	1.94
112428--112606	62	2.9	62	90	0	270	36	24	19	19	1.95
112533--112610	41	1.9	41	94	0	138	34	25	19	20	1.96
132263--132316	29	1.9	28	85	14	76	70	1	16	11	1.25
132514--132579	23	2.7	23	77	11	62	60	3	1	34	1.21
132615--132647	2	16.5	2	100	0	66	51	0	0	48	1.00
134560--134840	36	8.3	36	68	21	185	39	11	18	29	1.86
134572--134837	134	2.0	138	85	6	375	40	11	18	29	1.86
134499--134811	65	4.8	65	76	12	287	41	10	19	29	1.84
134626--134841	36	6.3	36	71	15	188	39	11	18	29	1.86
136725--136906	95	1.9	95	93	0	310	28	19	19	32	1.96
141598--141648	25	2.0	25	100	0	102	35	11	15	37	1.84
142014--142055	21	2.2	20	87	12	61	69	0	0	30	0.89
142021--142054	16	2.1	17	94	5	61	67	0	0	32	0.91
157452--157494	21	2.0	21	95	0	77	65	0	6	27	1.18
157612--157696	45	1.9	44	85	7	118	47	8	4	40	1.54
164380--164728	173	2.0	177	96	2	654	29	19	12	37	1.89
168532--168650	35	3.3	36	88	5	170	44	20	3	31	1.68
168578--168643	21	3.5	21	67	26	65	46	19	4	28	1.69
168534--168678	35	4.1	36	81	13	133	42	19	5	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173097--173168	37	2.0	37	86	8	103	44	18	5	31	1.72
176743--176801	29	2.0	29	100	0	118	49	23	6	20	1.73
177281--177388	37	2.9	37	91	0	171	32	12	14	40	1.83
178120--178208	34	2.6	35	91	3	137	30	10	19	40	1.84
178120--178219	35	2.9	33	86	7	121	31	10	19	40	1.84
178226--178294	36	1.9	36	90	0	111	42	14	21	21	1.89
178361--178791	101	4.2	100	75	15	287	39	12	20	28	1.88
178591--179014	36	12.1	36	80	10	441	40	12	21	26	1.88
178684--178748	21	3.4	21	68	24	70	41	12	21	24	1.87
178491--179010	246	2.1	240	86	3	720	40	12	21	26	1.88
178627--179014	102	3.7	102	84	5	460	39	12	21	26	1.89
180223--180288	32	2.1	32	85	0	87	42	16	10	30	1.82
180237--180306	32	2.2	32	86	0	95	40	14	12	32	1.84
181353--181411	25	2.4	25	81	10	61	3	18	3	74	1.10
181354--181402	13	3.8	13	84	15	66	2	18	4	75	1.06
181353--181404	27	2.0	25	92	7	86	3	17	3	75	1.11
183574--183602	15	1.9	15	100	0	58	55	13	20	10	1.68
184480--184510	13	2.4	13	94	0	53	38	6	22	32	1.80
184534--184604	37	1.9	37	94	0	124	35	11	14	39	1.81
193191--193225	3	12.0	3	87	6	54	34	0	0	65	0.93
195878--196694	207	4.0	207	85	5	1075	29	14	25	30	1.95
196947--197497	176	3.1	175	86	2	748	34	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198017--198075	30	2.0	30	86	0	82	25	25	27	22	2.00
198047--198324	148	1.9	148	87	5	411	36	19	19	24	1.94
198373--198434	30	2.1	30	84	0	79	24	29	27	19	1.98
198915--198996	42	2.0	42	95	0	146	13	31	15	39	1.87
200880--200967	33	2.6	33	80	5	106	51	18	12	18	1.76
201108--202956	402	4.7	396	79	9	1733	31	19	16	32	1.94
211871--211926	24	2.4	23	90	3	85	62	23	7	7	1.46
211868--211944	24	3.3	24	78	12	81	63	24	5	6	1.39
212760--212797	18	2.1	18	90	0	58	52	13	0	34	1.40
212870--212922	26	2.0	26	85	0	70	50	3	3	41	1.38

Tables:   1   2