genome.fa.s7989.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007989.1 Hibiscus syriacus cultivar Beakdansim tig00110437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510264

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214095--214168	35	2.1	35	100	0	148	43	18	12	25	1.85
214729--214802	38	2.0	38	89	2	114	40	32	10	16	1.83
215747--215774	2	14.0	2	100	0	56	50	0	0	50	1.00
228320--228381	3	20.7	3	86	6	90	67	1	0	30	1.00
228320--228381	13	4.6	13	86	13	90	67	1	0	30	1.00
228789--228932	42	3.4	42	90	0	207	29	11	29	29	1.91
235075--235112	15	2.6	14	88	12	58	76	7	0	15	1.01
240375--240439	22	2.9	22	93	2	103	27	29	24	18	1.98
241176--241224	2	24.0	2	95	4	89	48	2	0	48	1.12
242131--242175	21	2.1	21	87	0	63	15	24	28	31	1.96
245266--245331	22	3.0	22	91	6	107	25	28	25	19	1.99
246963--247007	21	2.1	21	87	0	63	15	24	28	31	1.96
252956--252988	2	17.0	2	93	6	59	48	0	0	51	1.00
253489--253590	36	2.8	36	88	4	125	43	19	13	23	1.87
257250--257326	28	2.8	28	90	4	111	18	19	27	35	1.95
264119--264184	33	2.0	34	85	8	91	15	10	28	45	1.79
264753--264800	18	2.8	17	84	6	62	29	25	6	39	1.80
265043--265090	18	2.8	18	90	6	73	31	25	6	37	1.81
264604--265184	290	2.0	288	93	2	986	39	19	12	29	1.87
270029--270138	29	3.8	29	92	2	186	46	16	20	17	1.84
270223--270256	15	2.3	15	89	0	50	17	17	32	32	1.94
276437--276593	64	2.5	64	76	14	153	35	19	18	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276970--277072	29	3.5	29	82	4	127	47	16	20	15	1.82
277164--277197	15	2.3	15	89	0	50	14	20	29	35	1.93
289217--289402	43	4.3	42	81	8	232	19	25	20	33	1.97
289236--289400	43	3.9	42	85	4	242	18	24	23	33	1.97
289238--289423	85	2.2	86	87	4	270	19	23	22	34	1.96
293072--293096	12	2.1	12	100	0	50	24	16	0	60	1.36
306407--306537	66	2.0	63	94	5	228	39	11	15	33	1.83
308418--308471	23	2.5	22	85	11	67	48	0	0	51	1.00
309549--309587	20	2.0	20	89	0	60	10	0	15	74	1.07
322520--322561	21	2.0	21	100	0	84	47	4	19	28	1.69
329213--329729	261	2.0	255	97	2	980	37	18	17	27	1.93
336666--336811	20	7.1	20	68	23	81	41	23	19	15	1.90
336745--336798	26	2.1	26	96	0	99	42	24	18	14	1.88
336893--337009	6	20.3	6	90	9	167	31	50	17	0	1.47
337340--337491	20	7.2	20	69	18	78	42	23	19	15	1.89
337423--337476	26	2.1	26	96	0	99	42	24	18	14	1.88
337575--337614	6	6.8	6	97	2	73	30	52	17	0	1.45
338107--338199	6	15.5	6	98	0	177	0	16	51	32	1.44
338263--338775	20	25.0	21	79	13	465	16	19	27	37	1.93
338256--338833	20	28.2	20	76	12	389	15	19	26	38	1.92
338279--338831	42	13.5	41	84	7	544	16	19	26	37	1.92
351913--352465	291	1.9	289	86	2	788	33	18	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355284--356452	339	3.5	342	76	11	890	37	18	17	27	1.93
355101--356452	338	4.0	337	75	11	878	38	18	16	27	1.91
368270--368311	19	2.2	19	91	0	66	26	16	4	52	1.63
369618--369662	22	2.0	23	83	8	58	62	2	6	28	1.33
371637--371680	19	2.3	19	96	0	79	52	11	0	36	1.38
371883--371941	32	1.9	31	86	10	86	47	8	16	27	1.76
372040--372066	2	13.5	2	100	0	54	51	0	0	48	1.00
374088--374535	20	22.2	20	82	11	494	41	22	19	15	1.89
374631--374657	6	4.5	6	100	0	54	33	51	14	0	1.43
375163--375309	6	24.5	6	100	0	294	0	16	50	33	1.45
375405--375658	20	12.2	20	74	13	203	16	19	22	42	1.89
375405--375658	42	6.1	42	77	14	208	16	19	22	42	1.89
377390--377438	13	3.8	13	86	0	71	20	46	16	16	1.83
377416--377451	18	2.0	18	88	0	54	22	47	19	11	1.80
377438--377484	10	5.5	8	85	14	51	17	36	23	23	1.95
389966--390098	42	3.2	42	90	4	207	17	23	14	45	1.85
393063--393095	2	16.5	2	100	0	66	48	0	0	51	1.00
397453--397508	24	2.3	24	100	0	112	48	16	12	23	1.80
401041--401080	19	2.1	19	100	0	80	22	5	22	50	1.68
419230--419266	19	1.9	19	88	0	56	10	29	35	24	1.89
419293--419335	21	2.0	21	86	0	59	16	25	27	30	1.97
422709--422734	5	5.2	5	100	0	52	0	19	57	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422724--422789	28	2.4	28	89	2	107	13	9	34	42	1.76
434130--434172	20	2.2	20	84	8	54	11	18	0	69	1.17
438681--438885	107	1.9	108	97	1	394	32	15	28	23	1.95
439481--439668	20	9.2	21	85	5	217	21	19	18	39	1.92
439481--439617	21	6.7	21	87	4	172	20	22	18	38	1.93
439480--439668	61	3.1	61	89	4	258	22	19	18	39	1.92
440516--440583	24	2.8	24	86	0	91	25	17	19	38	1.93
442472--442515	20	2.3	19	84	4	52	36	18	22	22	1.95
442499--442610	33	3.4	33	88	4	172	45	17	24	12	1.83
444675--444820	19	7.8	19	76	10	131	46	18	21	13	1.83
444826--444863	20	1.9	20	88	0	58	10	15	23	50	1.75
444866--444955	19	4.9	19	76	15	91	8	23	20	47	1.77
444832--444927	33	2.9	33	85	1	120	9	20	23	45	1.80
445046--445513	94	5.1	94	94	2	779	46	18	13	21	1.83
447197--447309	20	6.1	19	74	13	110	46	17	23	12	1.82
447305--447396	33	2.8	33	93	0	148	10	19	23	45	1.82
447335--447398	19	3.6	19	76	20	84	9	21	21	46	1.79
447952--448013	20	3.0	20	86	4	97	20	19	17	41	1.90
447952--448033	41	2.0	41	90	4	130	20	18	17	43	1.88
447952--448016	21	3.1	21	88	2	105	21	18	16	43	1.88
448046--448112	21	3.2	21	91	0	107	41	17	23	16	1.89
450458--450533	35	2.2	35	82	0	89	51	7	0	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451098--451126	14	2.1	14	100	0	58	65	6	0	27	1.18
454643--454683	21	2.0	21	90	0	64	29	26	17	26	1.97
454685--454766	44	1.9	41	87	7	119	31	6	29	32	1.82
454687--454777	19	4.4	20	76	17	105	35	5	28	30	1.80
455212--455419	21	10.2	21	73	8	178	32	24	21	22	1.98
455230--455419	40	4.7	40	79	8	170	32	24	21	22	1.98
455212--455419	61	3.4	61	84	5	242	32	24	21	22	1.98
455195--455389	101	1.9	101	94	0	345	33	22	21	22	1.97
456988--457021	15	2.3	15	94	0	59	8	41	2	47	1.50
458922--458955	12	2.8	12	95	0	59	38	5	38	17	1.74
473479--473557	23	3.9	19	74	19	54	25	36	24	13	1.92
474003--474037	17	2.0	18	88	5	54	34	20	2	42	1.66
477247--477349	23	4.5	23	74	7	75	17	21	20	40	1.91
482027--482073	18	2.6	18	76	6	51	23	29	21	25	1.99
482769--482842	31	2.4	31	81	2	85	21	20	27	31	1.98
488864--489120	127	2.0	129	81	6	308	30	19	16	33	1.94
494450--494567	39	3.0	39	88	0	182	27	16	21	34	1.94
497213--497252	8	5.0	8	87	0	53	52	7	0	40	1.30
497401--497430	14	2.1	15	93	6	53	33	6	0	60	1.23
499121--499158	17	2.2	17	90	0	58	23	5	7	63	1.42
500686--500753	21	3.2	20	72	15	66	30	7	4	57	1.46
500681--500767	42	2.1	42	97	0	165	31	5	5	57	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503985--504222	129	1.8	130	85	4	338	31	16	16	35	1.91

Tables:   1   2

The End!