genome.fa.s7990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007990.1 Hibiscus syriacus cultivar Beakdansim tig00110438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212873

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679--1710	16	2.0	16	93	0	55	31	18	3	46	1.65
3092--3150	29	2.0	29	100	0	118	42	13	10	33	1.78
11542--11584	23	1.9	21	81	13	50	34	13	18	32	1.90
14850--14888	20	1.9	21	84	5	53	33	0	38	28	1.57
23008--23080	13	5.5	12	81	15	74	1	21	2	73	1.03
23021--23085	8	7.9	8	73	23	55	1	21	3	73	1.05
23021--23085	22	3.0	21	75	20	62	1	21	3	73	1.05
23014--23079	19	3.6	19	71	20	61	1	21	3	74	1.04
23007--23085	27	2.9	26	80	14	88	1	22	2	73	1.03
25681--25732	19	2.6	21	87	6	81	44	7	15	32	1.75
26627--26680	24	2.3	24	93	3	92	20	18	24	37	1.94
27345--27517	90	1.9	91	90	3	278	27	23	27	21	1.99
36606--36678	5	14.8	5	74	16	64	2	19	1	76	0.98
36606--36679	16	4.6	16	75	15	64	2	18	1	77	0.97
36613--36678	8	7.9	8	78	20	55	3	19	1	75	1.01
36611--36673	13	5.1	12	72	12	56	3	19	1	76	1.01
36599--36680	18	4.6	18	80	10	73	2	20	2	74	1.05
36931--36966	18	1.9	20	88	11	58	66	0	11	22	1.22
43210--43263	24	2.3	24	93	3	92	20	18	24	37	1.94
49685--49735	24	2.1	24	85	0	66	33	17	11	37	1.86
52307--52340	16	2.1	16	89	10	52	52	20	14	11	1.73
55112--55141	13	2.4	13	94	5	53	43	0	30	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58183--58248	24	2.8	24	83	4	73	19	22	22	34	1.96
58191--58251	24	2.6	23	86	2	77	21	21	22	34	1.97
58914--59079	90	1.8	90	89	1	260	27	24	27	21	1.99
66975--67013	11	3.5	11	89	0	60	87	7	5	0	0.68
66975--67022	12	4.2	12	86	7	57	83	10	6	0	0.81
66974--67029	21	2.6	22	80	5	62	78	14	7	0	0.95
72125--72176	21	2.6	21	90	6	81	34	13	5	46	1.67
80466--80578	36	3.2	36	89	1	165	33	36	2	27	1.71
80466--80564	13	8.3	11	73	23	76	32	36	2	29	1.69
80549--80617	33	2.1	33	83	5	86	30	36	1	31	1.67
82305--82336	16	2.0	16	93	0	55	31	18	3	46	1.65
83722--83780	29	2.0	29	100	0	118	42	13	10	33	1.78
92178--92220	23	1.9	21	81	13	50	34	13	18	32	1.90
95482--95520	20	1.9	21	84	5	53	33	0	38	28	1.57
103643--103716	5	15.8	5	71	18	61	1	20	2	75	1.00
103640--103711	11	6.5	11	73	13	58	1	20	2	75	1.01
103640--103675	16	2.2	17	85	14	58	0	22	0	77	0.76
103650--103716	8	7.9	8	74	22	57	1	20	2	74	1.03
103651--103716	16	3.8	17	79	16	66	1	21	3	74	1.04
103636--103709	27	2.7	27	83	12	80	1	22	2	72	1.04
103667--103718	17	2.9	18	81	18	65	1	19	5	73	1.14
106307--106358	19	2.6	21	87	6	81	44	7	15	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107252--107305	24	2.3	24	93	3	92	20	18	24	37	1.94
107967--108138	89	1.9	91	89	4	269	27	23	27	22	1.99
117199--117273	5	15.2	5	75	15	68	2	20	1	76	0.99
117211--117248	8	4.8	8	87	9	51	5	18	0	76	0.97
117206--117268	13	5.1	12	72	12	56	3	19	1	76	1.01
123674--123703	12	2.5	12	94	0	51	50	6	6	36	1.55
123774--123827	24	2.3	24	93	3	92	20	18	24	37	1.94
126350--126400	24	2.1	24	85	0	66	33	17	11	37	1.86
130247--130297	24	2.1	24	85	0	66	33	17	11	37	1.86
132866--132899	16	2.1	16	89	10	52	52	20	14	11	1.73
135672--135701	13	2.4	13	94	5	53	43	0	30	26	1.55
138745--138813	24	2.9	23	86	4	93	18	21	24	34	1.96
138753--138813	23	2.6	24	89	2	88	19	21	24	34	1.96
144349--144379	13	2.4	13	100	0	62	80	6	12	0	0.89
144344--144379	13	2.6	14	86	13	56	80	8	11	0	0.90
144337--144405	22	3.2	21	76	13	59	76	13	10	0	1.01
153538--153582	10	4.8	9	83	8	54	84	6	8	0	0.78
153555--153592	11	3.5	11	88	0	58	78	7	13	0	0.94
158693--158744	21	2.6	21	90	6	81	34	13	5	46	1.67
166950--167032	36	2.3	36	95	0	148	31	36	3	28	1.75
167000--167049	22	2.2	23	89	3	75	36	36	4	24	1.74
172671--172783	36	3.2	36	92	1	174	32	36	3	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172671--172769	13	8.3	11	71	23	67	31	36	3	29	1.73
172683--172822	36	4.1	33	83	9	97	30	36	2	30	1.72
174685--174735	22	2.3	23	93	3	86	29	3	35	31	1.76
183832--183893	27	2.3	27	81	8	74	6	14	4	74	1.19
193964--194032	33	2.1	33	83	5	86	31	1	36	30	1.67
194003--194115	36	3.2	36	89	1	165	28	3	35	32	1.74
194017--194115	13	8.3	11	69	23	58	30	3	35	31	1.73
198376--198444	33	2.1	33	83	5	86	31	1	36	30	1.67
198430--198526	13	8.0	12	72	22	62	28	3	37	30	1.73
198415--198527	36	3.2	36	92	1	174	27	3	36	32	1.74
203296--203347	24	2.2	24	82	0	59	28	23	19	28	1.98
211393--211477	11	7.2	11	72	22	66	31	36	3	28	1.74
211390--211494	36	2.9	36	95	1	185	30	36	4	28	1.78

Tables:   1

The End!