Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008008.1 Hibiscus syriacus cultivar Beakdansim tig00110470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  294377

Tables:   1   2   

This is table  2  of  2  ( 138 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256672--257422
96
7.9
96
83
2
755
20
48
5
25
1.70
256768--257426
144
4.6
144
86
2
812
20
48
5
25
1.70
256987--257072
27
3.4
27
63
18
67
22
45
3
29
1.69
261531--262389
30
28.7
30
78
2
760
27
7
42
22
1.81
263673--263711
20
2.0
20
89
0
60
58
15
15
10
1.62
263912--263980
24
2.9
24
84
4
95
59
15
10
14
1.61
263933--263980
14
3.7
14
71
21
50
58
16
12
12
1.63
269957--270004
21
2.3
21
92
0
78
39
12
18
29
1.88
274613--274660
21
2.3
21
92
0
78
43
12
16
27
1.84
277630--277692
23
2.7
24
78
4
67
47
9
19
23
1.78
280314--280354
20
2.0
20
85
0
55
39
7
0
53
1.29
280578--280625
22
2.2
22
84
0
60
16
12
18
52
1.75
289894--290163
82
3.3
81
83
5
355
20
19
27
32
1.97
290164--290221
28
2.1
28
90
6
91
34
8
15
41
1.78
290152--290267
31
3.8
30
81
14
130
31
10
20
37
1.87
290322--290425
37
2.8
36
86
2
136
42
16
19
22
1.89
290548--291638
106
10.3
106
96
1
1893
22
18
25
33
1.97
290548--291638
529
2.1
528
94
1
1907
22
18
25
33
1.97

Tables:   1   2

The End!