genome.fa.s8013.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008013.1 Hibiscus syriacus cultivar Beakdansim tig00110478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1461402

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 699 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1175940--1177341	76	18.5	76	97	1	2600	21	20	22	35	1.96
1177467--1177570	3	34.0	3	86	7	147	36	0	0	62	1.02
1177988--1178014	14	1.9	14	100	0	54	77	7	14	0	0.97
1178274--1178302	13	2.2	13	100	0	58	0	31	62	6	1.22
1178848--1178948	53	1.9	53	81	4	123	27	5	4	61	1.40
1178920--1178995	35	2.2	35	78	4	82	34	6	1	57	1.33
1190974--1191181	75	2.8	76	83	5	244	23	31	24	21	1.98
1196999--1197038	21	1.9	21	89	0	62	25	40	25	10	1.86
1199618--1199826	75	2.8	75	84	4	242	23	31	23	21	1.98
1203079--1203809	369	2.0	369	97	0	1392	22	18	16	42	1.89
1207073--1207103	15	2.0	16	93	6	55	25	6	0	67	1.14
1210824--1210865	21	2.0	21	100	0	84	19	19	4	57	1.58
1213116--1213296	34	5.3	33	80	9	186	25	8	19	46	1.77
1213116--1213296	69	2.7	68	87	2	256	25	8	19	46	1.77
1216029--1216197	84	2.0	84	97	0	320	41	13	18	26	1.88
1217214--1217283	18	4.2	18	78	17	96	17	50	20	12	1.78
1217218--1217298	31	2.5	31	90	4	126	16	45	22	16	1.85
1217236--1217272	13	2.8	13	91	0	65	16	48	21	13	1.80
1218611--1218646	18	2.0	18	88	0	54	52	0	16	30	1.44
1219773--1219879	24	4.5	24	72	0	88	22	12	16	48	1.79
1222006--1222044	18	2.2	18	100	0	78	17	51	20	10	1.74
1223372--1223407	18	2.0	18	88	0	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224535--1224641	24	4.5	24	72	0	88	22	12	16	48	1.79
1232624--1232661	20	1.9	20	88	0	58	18	26	28	26	1.98
1238337--1238390	20	2.7	20	88	0	81	18	29	25	25	1.98
1251580--1251687	29	3.7	29	97	0	198	26	14	4	53	1.60
1251913--1251973	15	3.9	15	75	8	59	29	0	3	67	1.07
1251972--1252028	25	2.2	25	96	3	105	40	7	7	45	1.58
1251978--1252027	16	3.6	16	65	34	51	40	8	8	44	1.63
1252206--1252316	35	3.2	35	88	6	163	32	12	14	40	1.83
1253582--1254051	40	11.5	40	79	6	441	24	19	19	36	1.95
1253592--1254054	125	3.8	124	82	5	530	25	20	19	35	1.95
1257031--1257144	59	1.9	59	94	0	201	31	13	9	45	1.75
1257994--1258280	43	6.7	43	85	2	326	23	24	19	32	1.98
1257994--1258280	86	3.3	87	85	3	359	23	24	19	32	1.98
1257994--1258256	130	2.0	128	84	4	341	23	23	20	31	1.98
1262581--1262652	9	7.8	9	69	6	54	56	0	0	43	0.99
1262563--1262657	28	3.4	28	98	1	181	53	0	0	46	1.00
1262574--1262671	28	3.8	24	88	9	83	54	0	1	44	1.07
1263652--1263707	28	2.0	29	82	10	71	53	5	0	41	1.24
1265510--1265537	2	14.0	2	100	0	56	50	0	0	50	1.00
1269009--1269133	60	2.1	59	80	8	137	31	16	14	38	1.88
1271957--1272011	17	3.2	17	86	2	74	20	45	23	10	1.82
1271988--1272026	13	2.9	14	81	11	55	20	41	23	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272024--1272215	29	6.6	29	84	2	242	34	4	22	38	1.75
1279489--1279676	29	6.6	29	85	2	254	34	4	21	38	1.75
1279489--1279676	57	3.3	58	91	2	308	34	4	21	38	1.75
1279492--1279676	86	2.2	86	87	3	266	34	4	21	38	1.75
1285845--1285893	23	2.2	22	85	3	62	12	28	10	48	1.73
1286810--1286864	23	2.3	24	81	3	67	36	10	7	45	1.67
1296711--1296831	61	2.0	61	93	3	208	34	15	13	36	1.87
1309731--1309769	18	2.2	18	100	0	78	48	25	10	15	1.76
1310697--1310727	12	2.6	12	94	0	53	9	19	48	22	1.78
1310726--1310775	17	3.1	17	70	21	52	52	0	0	48	1.00
1310725--1310786	32	2.0	32	87	9	94	51	0	0	48	1.00
1320045--1320099	22	2.4	23	78	6	58	50	3	3	41	1.37
1322789--1322836	20	2.3	21	86	10	64	22	4	4	68	1.24
1323181--1323435	126	2.0	126	96	0	474	35	7	13	43	1.72
1327413--1327561	74	2.0	74	98	0	289	32	15	24	28	1.95
1336069--1336221	78	2.0	78	96	0	279	23	28	16	31	1.96
1337495--1337832	96	3.6	94	79	13	367	29	31	14	23	1.94
1337611--1337832	48	4.6	48	71	4	187	29	31	15	23	1.96
1341950--1342169	90	2.4	90	80	1	235	25	47	8	17	1.76
1341950--1342202	90	2.8	90	76	2	195	25	48	9	16	1.77
1342286--1342332	18	2.6	18	93	0	76	29	48	6	14	1.69
1345380--1345460	18	4.5	18	80	0	99	18	48	18	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345378--1345460	36	2.3	36	87	0	121	18	48	18	15	1.82
1347147--1347229	2	43.0	2	92	7	145	49	0	0	50	1.00
1347582--1347632	25	2.0	27	81	14	63	58	0	5	35	1.22
1357833--1357873	22	1.9	21	85	5	55	34	17	21	26	1.95
1359929--1360029	51	2.0	51	94	0	175	30	21	12	34	1.91
1362252--1362295	14	3.0	14	87	12	70	15	22	13	47	1.81
1362252--1362295	16	2.9	16	93	6	74	15	22	13	47	1.81
1378654--1378709	27	2.1	27	100	0	112	39	39	3	17	1.67
1381974--1382130	64	2.5	64	80	2	163	31	19	22	26	1.97
1388187--1388244	23	2.5	23	88	0	89	18	27	24	29	1.98
1390532--1390590	30	1.9	31	89	3	93	49	6	16	27	1.71
1390762--1390803	16	2.6	16	88	11	59	35	0	7	57	1.26
1391189--1391236	13	3.8	12	84	13	53	54	0	2	43	1.12
1392051--1392086	16	2.2	16	95	0	63	11	11	25	52	1.69
1397043--1397072	15	2.0	15	93	0	51	20	36	13	30	1.90
1432857--1432917	32	1.9	31	86	3	86	24	9	14	50	1.73
1434323--1434392	27	2.5	29	77	13	83	42	0	20	37	1.52
1438494--1438536	15	2.8	16	79	10	54	55	0	2	41	1.12
1439014--1439054	16	2.5	17	84	7	50	43	2	0	53	1.13
1440494--1440551	22	2.7	22	92	5	93	18	41	13	25	1.88
1440940--1440971	14	2.3	14	94	0	55	6	21	21	50	1.71
1440960--1441029	20	3.5	20	86	1	97	12	14	22	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440993--1441036	20	2.2	20	87	0	61	13	11	20	54	1.69
1448044--1448081	20	1.9	20	88	0	58	26	34	26	13	1.93
1448087--1448126	18	2.2	18	86	0	53	27	25	32	15	1.95
1452130--1452163	14	2.4	14	100	0	68	32	0	20	47	1.51
1452295--1452357	20	3.2	20	84	4	92	46	23	17	12	1.83
1452397--1452505	20	5.8	20	78	14	115	26	19	20	33	1.96
1452364--1452497	54	2.5	53	86	6	189	23	20	20	35	1.96
1452673--1452707	18	1.9	18	94	0	61	17	2	25	54	1.57
1454958--1455011	24	2.2	24	93	0	90	40	16	18	24	1.90
1455823--1455886	20	3.2	20	88	0	101	26	17	28	28	1.97
1458271--1458304	15	2.3	15	100	0	68	35	20	29	14	1.93

Tables:   1   2   3   4   5   6

The End!