genome.fa.s8019.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008019.1 Hibiscus syriacus cultivar Beakdansim tig00110487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  368755

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210873--210929	27	2.1	27	87	6	80	45	8	5	40	1.58
211022--211052	12	2.6	12	100	0	62	38	0	0	61	0.96
212169--212241	21	3.5	21	70	20	71	34	23	20	21	1.97
212149--212235	42	2.1	42	93	0	147	36	20	18	24	1.95
214170--214205	10	3.6	10	92	0	63	8	19	22	50	1.74
214470--214517	24	2.0	24	87	0	69	62	16	6	14	1.51
214496--214531	14	2.6	14	90	0	54	61	13	11	13	1.58
234644--234685	19	2.2	20	86	4	59	45	2	0	52	1.13
237812--238149	141	2.4	143	83	4	439	26	5	42	25	1.77
237987--238634	96	6.8	96	78	5	574	24	6	44	25	1.77
238091--238692	144	4.2	143	85	2	675	25	6	44	24	1.77
237759--238778	96	10.7	94	73	7	429	25	6	43	24	1.77
238481--238778	144	2.1	144	89	1	454	25	6	43	24	1.77
237776--238839	48	22.2	47	69	9	326	25	6	43	24	1.77
238481--238824	144	2.4	143	83	3	377	25	6	43	25	1.78
238664--238860	96	2.1	96	86	3	272	26	5	43	24	1.76
238835--238890	24	2.3	24	90	0	85	21	3	53	21	1.61
238643--238866	96	2.3	95	86	5	236	25	5	45	23	1.74
238860--239869	48	21.0	45	67	14	209	23	6	44	25	1.77
238739--238975	123	2.0	120	88	2	348	24	6	44	24	1.77
238927--239850	96	9.6	96	74	2	569	23	6	45	25	1.77
238641--239060	219	1.9	215	81	5	468	24	5	45	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238854--239415	144	3.9	144	90	1	824	22	6	45	25	1.77
238879--239871	144	6.9	144	88	3	753	23	6	44	25	1.77
239387--239934	291	1.9	291	93	0	954	23	6	44	25	1.76
239389--239934	144	3.8	145	91	3	857	23	6	44	25	1.76
241261--241325	26	2.5	26	97	0	121	12	12	38	36	1.80
242746--242827	2	41.0	2	100	0	164	50	0	0	50	1.00
244756--244800	23	2.0	23	95	0	81	20	28	26	24	1.99
248773--248842	19	3.7	19	80	0	68	50	14	17	18	1.79
251857--251893	2	18.5	2	100	0	74	51	0	0	48	1.00
253852--253892	8	5.2	8	82	5	57	12	2	0	85	0.70
253859--253883	13	1.9	13	100	0	50	12	0	0	88	0.53
253852--253892	15	2.6	16	88	3	57	12	2	0	85	0.70
256572--256605	16	2.1	17	88	5	52	50	0	0	50	1.00
256743--256826	43	1.9	43	83	11	109	35	11	5	46	1.65
262812--262837	1	26.0	1	100	0	52	0	0	0	100	0.00
263401--263498	32	3.3	32	68	31	101	38	3	6	52	1.42
269861--269978	59	2.0	60	88	1	175	40	17	12	28	1.87
272927--272973	11	4.4	11	81	5	51	42	0	6	51	1.27
272927--272967	21	2.0	21	85	0	55	46	0	4	48	1.23
272961--273006	20	2.4	19	85	3	56	52	0	4	43	1.21
272925--272995	32	2.2	32	92	2	117	43	0	5	50	1.25
274312--274359	20	2.3	21	89	7	71	29	4	0	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274400--274459	19	3.1	19	75	4	66	53	0	5	41	1.23
284199--284224	5	5.2	5	100	0	52	80	0	0	19	0.71
285474--285719	126	2.0	126	85	1	332	38	12	26	22	1.90
286065--286099	12	2.9	12	91	0	61	65	5	25	2	1.28
286296--286338	13	3.3	12	81	12	50	72	0	27	0	0.85
289067--289160	39	2.5	37	90	8	154	27	6	28	37	1.81
291976--292008	2	16.5	2	100	0	66	51	0	0	48	1.00
293501--293584	44	1.9	44	92	4	143	27	19	16	36	1.93
311117--311151	18	1.9	18	88	0	52	28	17	0	54	1.43
312252--312289	7	5.1	7	87	12	58	26	26	34	13	1.93
312252--312323	8	9.4	8	76	18	73	22	25	37	15	1.93
312252--312289	15	2.5	15	100	0	76	26	26	34	13	1.93
312279--312341	13	4.5	13	76	18	63	17	20	44	17	1.87
312290--312324	18	1.9	18	94	0	61	17	22	42	17	1.88
312264--312359	31	3.2	30	82	7	106	18	19	43	17	1.88
312318--312363	18	2.6	18	92	0	74	13	13	52	21	1.73
316115--316149	18	1.9	18	88	0	52	28	17	0	54	1.43
317248--317285	7	5.1	7	87	12	58	26	26	34	13	1.93
317248--317288	8	5.4	8	91	8	68	24	26	34	14	1.94
317248--317285	15	2.5	15	100	0	76	26	26	34	13	1.93
317275--317336	13	4.5	13	72	21	54	17	20	43	17	1.88
317248--317319	15	4.6	17	79	19	61	22	25	37	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317275--317352	30	2.6	31	81	6	88	17	17	44	19	1.87
317315--317355	17	2.4	17	87	4	55	14	12	51	21	1.75
319705--319766	21	3.0	21	73	0	70	33	24	16	25	1.95
319753--319907	40	3.8	40	82	4	186	37	26	18	18	1.93
319753--319906	20	7.7	20	80	7	168	37	26	18	18	1.93
320284--320354	33	2.2	33	92	0	115	11	22	18	47	1.80
320433--320506	21	3.7	21	82	7	91	44	17	25	12	1.83
320432--320539	32	2.9	39	80	16	131	43	18	25	12	1.85
320491--320546	14	3.7	14	78	17	67	42	23	25	8	1.82
320483--320562	32	2.5	33	91	4	135	46	22	22	8	1.79
320433--320551	32	3.4	32	84	14	130	43	20	25	10	1.84
320563--320675	33	3.5	32	95	2	199	10	23	20	46	1.81
320558--320675	14	7.1	18	68	24	89	11	23	20	44	1.83
322371--322750	93	4.1	93	98	1	726	22	12	18	46	1.83
322799--322864	19	3.4	20	83	6	82	46	25	16	10	1.79
324600--324635	14	2.6	14	95	0	63	33	0	22	44	1.53
324741--324838	19	5.4	19	84	13	143	45	17	22	14	1.84
324741--324857	53	2.2	53	96	1	218	43	17	24	13	1.86
324847--325016	19	9.7	19	76	19	181	15	21	18	45	1.85
324871--324925	14	3.6	14	73	21	56	10	23	20	45	1.82
324853--325030	72	2.6	68	84	11	240	14	21	18	46	1.84
324853--325030	33	5.2	33	84	10	250	14	21	18	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324847--325038	105	1.8	104	89	3	305	15	21	18	45	1.85
327453--327499	24	2.0	24	87	8	69	38	21	14	25	1.92
328180--328489	20	15.5	20	87	1	352	20	17	24	37	1.94
328476--328558	21	4.0	21	73	6	78	25	16	24	33	1.96
328456--328554	42	2.4	43	77	11	100	21	18	23	37	1.94
331813--331868	23	2.4	23	93	0	103	37	17	8	35	1.82
339066--339234	58	2.9	59	86	4	225	21	20	34	23	1.97
343370--343414	13	3.5	13	100	0	90	6	22	53	17	1.67
343706--343789	3	28.0	3	92	0	141	65	0	2	32	1.05
344049--344709	113	5.8	113	94	2	1037	30	17	14	38	1.89
345421--345906	87	5.6	87	87	5	652	37	21	13	27	1.91
345421--345908	257	1.9	254	87	7	725	37	21	13	28	1.91
347049--347117	7	9.4	7	80	12	68	0	17	0	82	0.67
347057--347114	10	5.5	10	79	18	55	0	15	0	84	0.62
347050--347116	17	3.9	17	86	11	100	0	16	0	83	0.64
358532--358570	15	2.5	17	80	20	57	71	5	2	20	1.17
359177--359207	13	2.4	13	94	0	53	9	64	25	0	1.24
361381--361427	19	2.5	19	77	16	53	65	0	0	34	0.93
367676--367790	56	2.1	56	100	0	230	42	14	19	23	1.88
367866--367934	23	3.0	23	85	2	95	63	7	7	21	1.44

Tables:   1   2

The End!