genome.fa.s8022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008022.1 Hibiscus syriacus cultivar Beakdansim tig00110495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1039607

Tables:   1   2   3   

This is table  1  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3704--3743	21	1.9	21	94	0	71	57	0	25	17	1.40
3839--3867	11	2.6	11	100	0	58	37	0	27	34	1.57
3892--4003	35	3.2	35	83	2	136	31	4	35	28	1.77
9556--9666	35	3.2	35	83	2	134	32	2	36	28	1.72
11371--11397	2	13.5	2	100	0	54	51	0	0	48	1.00
12098--12230	46	2.8	46	86	2	158	34	22	27	15	1.95
25893--25940	23	2.1	23	100	0	96	45	0	22	31	1.53
30398--30459	20	3.2	20	90	4	92	37	11	3	48	1.55
31212--31256	6	7.3	6	80	14	56	80	2	15	2	0.92
34273--34320	15	3.1	16	80	14	57	14	16	0	68	1.21
34659--34692	17	2.0	17	100	0	68	35	29	11	23	1.90
41425--41467	20	2.2	20	87	4	61	39	9	4	46	1.57
42262--42311	20	2.5	20	87	3	66	36	10	6	48	1.61
42783--42897	35	3.3	35	86	3	160	32	2	37	27	1.71
50846--50890	21	2.1	21	84	8	56	33	28	22	15	1.95
52566--52625	23	2.6	23	94	0	102	20	28	28	23	1.99
67227--67275	19	2.5	20	78	21	59	67	0	8	24	1.18
67074--67629	279	2.0	278	94	1	988	39	7	24	28	1.82
71774--71819	13	3.5	13	75	19	51	2	21	2	73	1.04
71779--71819	8	4.9	8	91	8	64	2	21	2	73	1.07
78634--78679	8	5.9	8	85	10	60	8	13	0	78	0.97
78937--78985	19	2.5	20	78	21	59	67	0	8	24	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83702--83736	12	2.8	13	91	8	56	80	5	14	0	0.89
83701--83736	13	2.8	12	88	12	54	80	5	13	0	0.88
85258--85378	50	2.4	50	95	0	215	34	0	14	51	1.42
92409--92453	19	2.3	20	84	3	56	82	8	4	4	0.94
110223--110340	58	2.1	57	90	1	182	33	11	22	32	1.89
115261--115326	33	2.0	33	87	0	96	28	22	24	24	1.99
119344--119375	11	2.9	11	100	0	64	25	9	28	37	1.87
123338--123378	22	1.9	21	85	14	57	24	4	36	34	1.77
126368--126418	24	2.1	24	85	0	66	33	17	11	37	1.86
127594--127645	23	2.3	22	83	6	68	7	13	15	63	1.51
129095--129141	20	2.3	20	92	0	76	29	10	23	36	1.89
134812--134873	33	2.0	30	82	14	74	17	22	3	56	1.55
139227--139277	24	2.2	23	82	3	57	9	13	15	60	1.58
144187--144216	13	2.4	13	94	5	53	26	30	0	43	1.55
146954--146989	5	7.6	5	87	12	58	0	16	0	83	0.65
146954--146989	13	2.6	13	91	8	54	0	16	0	83	0.65
150043--150094	22	2.3	23	93	3	88	28	3	34	32	1.76
150045--150160	36	3.2	37	81	13	143	30	5	34	30	1.79
150063--150170	36	3.0	36	97	0	207	28	5	36	29	1.80
151540--151578	20	2.0	20	90	5	62	30	12	10	46	1.75
152551--152602	21	2.6	21	90	6	81	34	13	5	46	1.67
152954--152998	13	3.5	13	84	3	56	35	35	2	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153313--153365	25	2.1	25	82	10	63	77	3	13	5	1.09
153332--153383	16	3.4	17	72	22	60	75	3	13	7	1.17
153319--153388	30	2.3	29	81	13	88	74	4	15	5	1.17
153332--153387	30	1.9	28	92	7	94	75	3	14	7	1.16
156006--156183	90	2.0	90	89	0	275	43	7	10	37	1.69
165341--165393	24	2.2	24	82	0	61	11	16	11	60	1.59
172596--172668	24	2.8	27	82	15	91	58	15	13	12	1.63
176406--176447	22	1.9	22	85	0	57	42	16	0	40	1.48
177358--177409	21	2.6	21	84	6	72	30	13	7	48	1.71
181086--181137	21	2.6	21	90	6	81	32	13	7	46	1.72
186355--186406	21	2.6	21	90	6	81	32	13	7	46	1.72
186818--186856	18	2.0	20	90	9	64	23	10	0	66	1.22
186814--186862	18	2.5	20	78	21	59	24	8	0	67	1.18
189680--189718	18	2.0	20	90	9	64	23	10	0	66	1.22
189676--189724	18	2.5	20	78	21	59	24	8	0	67	1.18
189988--190052	19	3.5	18	81	10	69	75	4	16	3	1.10
201539--201573	16	2.2	15	90	10	52	62	0	25	11	1.28
207577--207613	15	2.4	16	86	9	58	5	13	0	81	0.86
216338--216388	19	2.6	20	90	3	77	43	5	15	35	1.71
217285--217344	30	2.0	31	83	3	77	55	10	8	26	1.61
219802--219831	8	3.6	8	91	8	51	0	13	0	86	0.57
219768--219831	26	2.5	25	80	7	74	4	17	1	76	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220527--220569	20	2.2	20	87	4	61	41	4	16	37	1.69
221471--221530	30	2.0	31	83	3	77	55	10	8	26	1.61
222101--222139	18	2.0	20	90	9	64	23	10	0	66	1.22
222097--222145	18	2.5	20	78	21	59	24	8	0	67	1.18
223094--223141	24	2.0	25	87	4	71	52	10	22	14	1.72
226639--226664	11	2.4	11	100	0	52	30	46	15	7	1.74
233097--233147	19	2.6	20	87	3	68	45	5	15	33	1.71
237714--237762	8	5.9	8	84	15	64	0	20	2	77	0.87
237686--237764	33	2.4	33	79	8	81	3	18	3	73	1.14
237717--237763	9	5.4	9	78	17	55	0	19	2	78	0.85
237712--237763	17	3.1	16	89	8	77	0	19	1	78	0.84
238458--238508	19	2.6	20	90	3	77	43	5	15	35	1.71
239799--239845	19	2.6	17	86	10	58	68	0	12	19	1.21
242815--242851	15	2.4	16	90	4	58	13	10	5	70	1.32
243228--243268	9	4.4	9	84	6	55	73	17	7	2	1.17
243227--243261	10	3.6	10	84	7	54	77	14	8	0	0.99
243203--243261	19	3.3	19	88	6	79	86	8	5	0	0.70
243203--243233	1	31.0	1	100	0	62	100	0	0	0	0.00
254654--254721	26	2.6	25	77	15	66	2	17	2	76	1.04
254665--254716	13	4.1	12	76	18	52	3	15	3	76	1.07
264203--264259	23	2.5	24	85	8	82	8	14	14	63	1.52
272420--272528	36	3.0	36	90	2	166	29	35	4	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272686--272723	20	1.9	20	100	0	76	7	26	0	65	1.19
273000--273046	14	3.1	15	75	12	51	72	4	19	4	1.18
276571--276682	36	3.1	36	93	1	190	30	37	3	28	1.74
279957--280023	33	2.1	33	83	13	86	56	0	25	17	1.41
280540--280589	19	2.6	19	87	0	64	44	6	14	36	1.69
281724--281775	19	2.6	21	90	6	81	46	7	13	32	1.72
283614--283692	35	2.2	37	88	4	117	30	1	34	34	1.66
288092--288140	11	4.2	12	75	19	50	28	2	36	32	1.69
288091--288170	35	2.2	37	88	4	119	28	2	36	32	1.71
291393--291440	19	2.4	21	83	13	66	66	0	8	25	1.19
291829--291872	21	2.2	21	88	8	65	47	6	13	31	1.69
292944--292972	15	2.0	15	93	6	51	75	3	20	0	0.94
293494--293796	157	1.9	156	97	2	572	37	17	22	22	1.94
301516--301555	8	5.0	8	84	9	55	77	0	20	2	0.88
305298--305338	8	5.0	8	84	3	55	78	0	19	2	0.87
312137--312257	11	10.2	12	69	26	71	31	2	35	30	1.71
312168--312273	23	4.5	22	68	26	74	31	3	34	30	1.75
312136--312276	36	3.9	36	90	0	221	30	3	35	30	1.75
312154--312275	13	10.2	12	69	24	55	31	3	36	29	1.74
318056--318094	19	2.1	18	85	4	51	43	5	10	41	1.61
318521--318642	11	10.2	12	70	23	64	29	4	36	29	1.76
318535--318640	23	4.5	23	70	24	78	29	4	35	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318503--318643	36	3.9	36	95	0	248	29	4	36	29	1.78
321138--321163	5	5.2	5	100	0	52	0	19	0	80	0.71
325396--325438	23	1.9	21	81	13	50	34	13	18	32	1.90
326295--326323	15	2.0	15	93	6	51	75	3	20	0	0.94
327628--327657	13	2.4	13	94	5	53	26	30	0	43	1.55
335215--335318	36	2.9	36	86	2	138	29	36	2	30	1.72
335673--335719	25	2.0	24	84	16	62	74	8	17	0	1.05
335935--335983	23	2.1	24	81	11	57	14	22	0	63	1.30
339801--339883	36	2.3	36	93	0	139	30	36	3	30	1.75
339801--339897	36	2.7	36	87	3	133	28	34	3	34	1.73

Tables:   1   2   3