genome.fa.s8022.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008022.1 Hibiscus syriacus cultivar Beakdansim tig00110495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1039607

Tables:   1   2   3   

This is table  2  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341383--341425	23	1.9	21	81	13	50	34	13	18	32	1.90
343880--343934	24	2.2	24	81	12	58	43	9	7	40	1.64
350236--350282	14	3.1	15	75	12	51	72	6	19	2	1.17
357205--357247	17	2.5	17	96	0	77	34	27	16	20	1.94
358836--358937	13	8.7	12	67	22	56	33	36	1	28	1.69
358834--358937	36	2.9	36	94	1	174	32	36	1	28	1.69
361853--361908	19	2.9	19	80	15	62	62	0	12	25	1.30
362311--362361	20	2.6	20	93	3	86	41	5	15	37	1.72
363275--363334	30	2.0	31	83	3	77	55	10	8	26	1.61
365976--366026	19	2.6	20	90	3	77	43	5	15	35	1.71
369268--369306	12	3.5	11	86	13	53	2	15	2	79	0.95
370001--370051	19	2.6	20	90	3	77	43	5	15	35	1.71
370961--371020	30	2.0	31	83	3	77	55	10	8	26	1.61
372242--372327	11	7.2	12	72	22	58	30	2	37	30	1.70
372224--372327	36	2.9	36	97	1	192	29	2	36	30	1.72
377858--377943	11	7.2	12	74	22	67	29	2	37	31	1.70
377840--377943	36	2.9	36	94	1	174	28	2	36	31	1.72
377841--377941	11	8.6	12	73	22	65	28	2	36	31	1.72
379540--379580	14	2.9	15	78	10	50	73	2	21	2	1.07
384855--384905	20	2.6	20	90	3	77	35	15	5	43	1.71
385613--385684	34	2.2	31	85	11	92	73	4	16	5	1.18
388668--388718	20	2.6	20	90	3	77	35	15	5	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391826--391869	19	2.2	21	88	8	65	36	13	6	43	1.71
391826--391877	21	2.6	19	87	6	68	34	15	5	44	1.70
395113--395156	19	2.2	21	88	8	65	38	11	6	43	1.67
395113--395164	21	2.6	19	87	6	68	36	13	5	44	1.68
397388--397434	5	9.0	5	86	9	51	76	6	17	0	0.98
397393--397434	12	3.8	11	84	9	59	76	7	16	0	1.00
402896--403078	91	2.0	91	91	0	294	21	27	21	28	1.99
403896--403924	15	2.0	15	93	6	51	75	3	20	0	0.94
407841--407890	22	2.2	23	89	3	75	24	4	36	36	1.74
407857--407940	36	2.3	36	95	0	150	30	2	35	30	1.71
412922--412971	22	2.2	23	89	3	75	24	4	36	36	1.74
412939--413021	36	2.3	36	95	0	148	28	3	36	31	1.75
413370--413409	18	2.2	18	100	0	80	22	5	50	22	1.68
415173--415231	23	2.5	24	83	5	86	64	10	16	8	1.48
420216--420320	36	2.9	36	92	1	176	30	35	4	29	1.78
420924--420975	15	3.4	15	75	15	52	15	17	0	67	1.24
424088--424131	14	2.9	15	83	13	54	77	4	13	4	1.08
427994--428073	35	2.2	37	91	4	128	31	37	3	27	1.74
429621--429664	21	2.2	19	84	8	52	0	13	6	79	0.92
430007--430075	33	2.1	33	83	5	86	31	1	36	30	1.67
430061--430125	13	5.4	12	75	21	57	29	3	35	32	1.73
430046--430158	36	3.2	36	91	1	165	28	3	35	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436092--436147	28	2.1	25	83	9	67	8	16	16	58	1.61
452201--452232	16	2.0	16	93	0	55	31	15	6	46	1.71
453348--453387	19	2.0	20	90	4	64	25	10	0	65	1.24
456240--456284	19	2.3	20	85	14	60	24	11	0	64	1.26
464533--464594	24	2.6	23	74	5	61	8	16	8	67	1.39
466963--467018	25	2.2	25	78	6	60	64	0	0	35	0.94
466951--467040	34	2.7	33	94	1	153	61	0	0	38	0.96
469152--469192	17	2.4	17	87	0	55	31	14	9	43	1.78
471913--471971	19	3.0	20	74	20	61	74	3	20	1	1.05
473240--473292	24	2.2	24	82	0	61	37	16	15	30	1.90
474382--474441	30	2.0	31	83	3	77	28	10	10	51	1.67
475339--475389	20	2.6	20	90	3	77	35	15	5	43	1.71
475800--475838	18	2.0	20	90	9	64	23	10	0	66	1.22
475796--475844	18	2.5	20	78	21	59	24	8	0	67	1.18
480293--480342	18	2.8	17	82	11	55	76	6	14	4	1.13
486329--486374	23	2.0	23	83	8	58	36	6	8	47	1.60
487976--488023	8	5.9	8	88	11	71	77	2	20	0	0.88
487976--488030	5	10.8	5	78	21	53	78	1	20	0	0.85
487975--488033	16	3.7	15	82	10	64	77	1	20	0	0.85
490913--490958	23	2.0	23	83	8	58	36	6	8	47	1.60
493510--493552	23	1.9	21	81	13	50	32	18	13	34	1.90
497209--497349	36	3.9	36	93	0	239	29	35	5	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497212--497332	11	10.2	11	69	23	68	29	35	4	29	1.79
497795--497841	14	3.1	15	75	12	51	72	6	19	2	1.17
505778--505824	25	2.0	24	84	16	62	0	17	8	74	1.05
507726--507791	13	5.5	11	74	22	62	33	34	3	28	1.73
507708--507808	36	2.9	36	94	2	170	31	35	3	28	1.76
510149--510200	19	2.6	21	90	6	81	46	7	13	32	1.72
513354--513378	8	3.1	8	100	0	50	0	24	0	76	0.80
513656--513704	19	2.5	20	78	21	59	67	0	8	24	1.18
515127--515239	36	3.2	36	87	3	149	32	34	4	28	1.77
515865--515916	19	2.6	21	90	6	81	46	7	13	32	1.72
522866--522934	36	1.9	36	90	0	111	21	23	5	49	1.71
522905--522962	27	2.1	27	100	0	116	24	22	6	46	1.76
522956--522986	16	1.9	16	100	0	62	25	29	6	38	1.81
524901--524941	17	2.5	17	82	17	52	80	2	17	0	0.82
527025--527064	19	2.0	20	90	4	64	65	0	15	20	1.28
533346--533371	10	2.6	10	100	0	52	76	7	15	0	0.99
542582--542628	19	2.6	18	83	12	60	65	0	14	19	1.26
546023--546068	19	2.5	18	86	10	58	4	15	6	73	1.19
550209--550300	35	2.6	36	86	3	125	30	34	3	31	1.74
550432--550469	15	2.5	16	87	8	53	10	21	2	65	1.35
550644--550684	9	4.4	9	90	6	64	80	0	19	0	0.71
550644--550694	19	2.7	19	82	11	70	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550650--550693	23	1.9	23	90	9	72	79	0	20	0	0.73
552852--552890	2	19.5	2	100	0	78	48	0	0	51	1.00
555244--555276	15	2.2	15	94	0	57	15	27	0	57	1.38
555482--555516	6	5.7	6	86	6	52	82	2	14	0	0.77
555479--555516	12	3.1	12	85	7	58	81	5	13	0	0.85
560353--560389	19	2.0	18	89	5	56	78	2	18	0	0.87
561177--561222	23	2.0	23	83	8	58	36	6	8	47	1.60
563241--563283	23	1.9	21	81	13	50	32	18	11	37	1.87
571352--571392	22	1.9	21	90	5	64	36	36	2	24	1.69
573789--573822	16	2.1	16	89	10	52	82	2	14	0	0.79
575931--575982	21	2.6	21	90	6	81	34	13	5	46	1.67
581098--581140	23	1.9	21	81	13	50	34	13	18	32	1.90
590118--590171	19	2.8	20	83	8	67	35	7	12	44	1.71
590123--590173	20	2.6	19	87	3	66	33	9	9	47	1.70
593089--593157	33	2.1	33	83	5	86	30	34	1	33	1.67
597510--597622	36	3.2	36	87	1	147	33	33	3	29	1.75
597593--597661	33	2.1	33	83	5	86	30	34	1	33	1.67
606589--606630	21	2.0	22	86	13	61	57	0	19	23	1.41
607697--607748	19	2.6	20	90	6	79	44	5	15	34	1.70
609089--609134	19	2.7	17	78	18	51	34	21	15	28	1.94
609102--609139	19	2.0	19	100	0	76	42	15	15	26	1.87
612676--612702	1	27.0	1	100	0	54	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617023--617071	19	2.5	20	78	21	59	67	0	8	24	1.18
617483--617534	19	2.6	21	90	6	81	46	7	13	32	1.72
619615--619662	23	2.1	23	100	0	96	45	20	16	16	1.85
623136--623197	19	3.2	20	80	13	60	77	6	12	3	1.08
628584--628626	20	2.2	20	88	12	63	30	9	9	51	1.65
628964--629100	71	1.9	71	85	2	186	27	36	2	32	1.72
628964--629100	36	3.9	36	85	2	188	27	36	2	32	1.72
628968--629115	71	2.1	72	82	5	174	30	35	2	31	1.72
646707--646752	24	2.0	24	95	4	85	8	13	19	58	1.60
646711--646763	24	2.3	24	83	6	65	7	16	15	60	1.57

Tables:   1   2   3