genome.fa.s8040.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008040.1 Hibiscus syriacus cultivar Beakdansim tig00110527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  437554

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300795--300845	24	2.1	24	100	0	102	41	11	17	29	1.85
304999--305471	49	9.6	49	85	3	596	33	12	21	31	1.91
304999--305471	150	3.2	145	83	4	592	33	12	21	31	1.91
306769--306845	29	2.6	31	82	10	81	45	7	18	28	1.77
309936--310308	130	2.9	129	80	6	387	33	17	18	30	1.94
316752--316781	12	2.5	12	100	0	60	13	33	53	0	1.40
317179--317214	17	2.1	17	89	5	54	19	2	0	77	0.88
318933--318984	20	2.6	19	87	6	77	34	15	30	19	1.93
319378--319811	55	7.9	55	86	1	600	35	19	17	27	1.94
320083--320156	21	3.4	21	67	17	60	47	5	22	24	1.72
322241--322290	23	2.0	26	85	11	70	52	0	2	46	1.12
323493--323563	18	3.7	20	86	5	60	1	5	25	67	1.20
323517--323563	18	2.6	18	100	0	94	0	6	34	59	1.23
324048--324107	3	20.0	3	76	6	59	56	0	5	38	1.21
324247--324531	124	2.3	122	86	5	369	22	17	16	43	1.87
324508--325239	113	6.5	113	90	1	1078	31	19	12	37	1.89
326035--326324	93	3.1	93	94	1	501	34	20	15	29	1.93
327317--327357	15	2.5	17	84	11	59	0	17	0	82	0.66
338493--338544	28	2.0	25	81	11	59	53	0	3	42	1.19
338503--338557	23	2.3	26	81	12	73	54	0	3	41	1.18
339746--339791	21	2.2	21	92	0	74	0	4	23	71	1.03
340287--340361	3	25.0	3	81	5	89	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344864--344936	22	3.3	22	84	1	92	32	19	16	31	1.94
344872--344971	22	4.5	23	79	8	100	31	19	20	30	1.96
344873--344971	45	2.2	45	80	8	114	31	18	20	30	1.96
364699--364842	64	2.2	64	82	8	164	22	15	15	46	1.83
392497--392542	22	2.1	22	87	0	65	39	21	17	21	1.93
396704--397056	59	6.0	59	87	1	476	33	12	19	34	1.89
397382--397442	29	2.1	29	87	6	88	49	4	18	27	1.68
397586--397646	2	30.5	2	100	0	122	50	0	0	49	1.00
401480--401520	12	3.4	12	80	12	57	12	17	14	56	1.68
401468--401572	24	4.4	24	84	1	113	20	11	14	54	1.70
405492--405537	22	2.1	22	84	8	58	36	26	19	17	1.94
406580--406630	25	2.0	25	88	7	77	31	17	11	39	1.86
409733--409796	20	3.2	20	76	8	51	65	4	4	25	1.31
411187--411242	20	2.8	20	78	10	60	35	16	19	28	1.93
414529--414656	20	6.4	20	96	0	238	31	10	27	31	1.90
415094--415385	59	5.0	59	87	2	399	32	12	18	36	1.88
415715--415775	29	2.1	29	87	6	88	44	6	22	26	1.77
416663--416711	18	2.7	19	76	17	59	51	0	6	42	1.27
417354--417477	57	2.1	58	82	5	153	44	12	6	37	1.67
419749--419827	38	2.1	38	95	0	140	40	6	26	26	1.80
426631--426704	20	3.5	20	70	21	60	45	10	22	20	1.82
426617--426859	46	5.3	46	91	2	389	44	11	22	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426650--426727	26	3.2	26	66	23	71	43	11	23	21	1.85
426722--426847	20	5.7	20	70	20	90	42	11	25	20	1.85
426879--426907	2	14.5	2	100	0	58	51	0	0	48	1.00
428629--428673	2	22.5	2	100	0	90	51	0	0	48	1.00
428036--430234	619	3.6	620	88	5	3271	38	10	18	32	1.84
429842--429896	2	27.5	2	100	0	110	50	0	0	49	1.00
430757--430799	2	21.5	2	100	0	86	48	0	0	51	1.00
433044--433245	46	4.3	50	77	17	166	45	11	21	21	1.83
433087--433127	12	3.1	14	80	20	61	51	12	14	21	1.75
433078--433245	26	7.0	26	74	16	182	45	10	22	20	1.82
433040--433245	72	2.9	71	91	1	333	45	11	21	21	1.83
433765--436344	598	4.3	599	90	2	3831	38	10	19	31	1.86

Tables:   1   2

The End!