genome.fa.s8044.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008044.1 Hibiscus syriacus cultivar Beakdansim tig00110532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  979496

Tables:   1   2   3   4   

This is table  4  of  4  ( 380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939866--940235	179	2.1	177	85	3	501	37	14	14	33	1.87
940771--940808	18	2.1	18	85	9	51	31	36	2	28	1.71
942860--942886	2	13.5	2	100	0	54	48	0	0	51	1.00
944781--946297	198	7.6	197	81	8	1587	37	13	13	34	1.85
944781--946296	390	3.8	393	85	4	1818	37	13	13	34	1.85
946548--946939	118	3.4	118	72	12	393	30	17	13	38	1.88
946518--947079	224	2.5	225	90	1	876	32	17	12	37	1.87
947056--947109	23	2.3	23	93	0	99	27	27	14	29	1.95
950476--950646	54	3.2	54	88	3	229	31	18	17	32	1.94
963607--963659	23	2.3	23	90	0	79	28	24	24	22	2.00
965252--965332	26	3.1	26	100	0	162	16	18	23	41	1.89
967097--967143	18	2.6	18	93	0	76	34	17	29	19	1.94
967982--968218	54	4.4	54	76	5	214	31	18	17	32	1.94
967982--968218	105	2.2	107	75	3	237	31	18	17	32	1.94
968124--968235	54	2.1	54	82	0	134	37	17	12	32	1.88
968959--969023	21	3.1	21	86	8	80	15	6	21	56	1.60
969045--969071	2	13.5	2	100	0	54	48	0	0	51	1.00
969684--969740	18	3.2	18	82	0	78	29	17	28	24	1.97
976325--976363	20	1.9	21	89	5	62	23	38	25	12	1.90
977063--977088	12	2.2	12	100	0	52	23	53	0	23	1.46

Tables:   1   2   3   4

The End!