Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008048.1 Hibiscus syriacus cultivar Beakdansim tig00110540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  541079

Tables:   1   2   3   

This is table  3  of  3  ( 254 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
516916--517852
105
9.0
105
93
1
1479
22
17
26
33
1.96
518495--518652
68
2.4
65
84
4
199
35
9
22
32
1.86
518495--518889
65
5.8
65
72
13
233
38
11
20
28
1.88
518628--518908
36
8.0
35
77
12
263
40
13
19
25
1.89
518576--518889
138
2.3
137
84
1
423
39
13
20
27
1.89
518664--518852
102
1.9
102
88
2
290
40
13
19
26
1.89
518770--518950
72
2.5
72
85
4
224
38
15
20
25
1.92
519840--519888
22
2.2
22
92
0
80
28
14
24
32
1.94
519852--519895
22
2.0
22
86
0
61
31
13
22
31
1.93
520524--520595
22
3.3
22
79
12
69
2
9
8
79
1.04
520578--520618
16
2.6
15
85
11
55
0
12
9
78
0.98
523794--523828
16
2.1
18
89
10
56
65
0
8
25
1.21
523940--523972
2
16.5
2
100
0
66
51
0
0
48
1.00
534454--534484
9
3.4
9
100
0
62
32
0
0
67
0.91

Tables:   1   2   3

The End!