genome.fa.s8051.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008051.1 Hibiscus syriacus cultivar Beakdansim tig00110546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  579609

Tables:   1   2   3   

This is table  2  of  3  ( 337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307704--307761	31	1.9	31	82	6	75	53	6	0	39	1.28
307774--307865	31	2.9	31	81	10	105	41	4	6	47	1.49
316979--317021	20	2.4	17	75	20	50	20	23	4	51	1.66
316988--317026	20	2.0	20	100	0	78	23	25	5	46	1.73
319003--319069	30	2.2	30	86	5	100	17	26	31	23	1.97
319741--319803	27	2.2	29	83	8	76	39	0	11	49	1.38
322762--322789	2	14.0	2	100	0	56	50	0	0	50	1.00
322971--323269	153	2.0	153	86	0	427	39	26	18	15	1.91
324240--324276	18	2.0	20	89	10	60	37	8	5	48	1.56
337404--337453	26	2.0	26	88	4	75	54	0	4	42	1.19
338320--338377	31	1.9	30	89	3	89	53	3	3	39	1.35
338867--338905	19	2.0	20	90	5	62	56	2	0	41	1.13
348195--348261	29	2.3	29	86	2	98	29	37	1	31	1.67
360144--360171	2	14.0	2	100	0	56	50	0	0	50	1.00
360193--360283	45	2.0	46	91	2	148	28	26	18	26	1.98
361821--361882	30	2.1	30	84	6	81	41	4	20	32	1.74
363348--363402	22	2.3	24	87	9	78	43	0	5	50	1.25
363350--363405	25	2.3	24	82	11	69	41	0	5	53	1.24
363512--363554	21	2.0	21	86	0	59	30	0	11	58	1.34
363891--363976	43	2.0	43	100	0	172	30	6	20	41	1.79
364099--364154	2	28.0	2	100	0	112	50	0	0	50	1.00
364966--365017	23	2.3	23	78	15	63	71	3	5	19	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365022--365130	51	2.2	49	82	11	159	34	13	20	31	1.91
368856--369389	83	6.4	83	83	2	631	26	18	23	32	1.97
368930--369388	167	2.7	166	85	3	616	25	18	23	32	1.97
369480--369630	43	3.5	42	82	5	169	24	16	28	30	1.97
369800--369950	64	2.4	64	82	5	182	31	12	21	34	1.91
372011--372073	30	2.1	30	85	2	83	53	22	9	14	1.69
378499--378605	53	2.0	54	94	1	189	15	24	23	36	1.94
378958--378986	14	2.0	15	93	6	51	37	0	0	62	0.96
380112--380164	21	2.5	21	75	9	54	41	0	11	47	1.39
382544--382588	19	2.4	19	84	0	63	40	11	17	31	1.85
383235--383586	32	11.1	32	88	3	489	35	19	17	27	1.94
392542--392575	16	2.1	16	100	0	68	11	32	5	50	1.63
393380--393747	183	2.0	183	97	1	693	33	18	16	31	1.93
394502--394666	81	2.0	81	95	2	296	24	5	18	51	1.67
394635--394679	23	2.0	23	90	0	72	28	2	15	53	1.54
395882--395928	23	2.0	24	88	12	71	40	4	0	55	1.19
395900--395992	30	3.1	30	80	1	114	35	9	1	53	1.41
396001--396105	28	3.5	29	77	13	88	54	0	7	38	1.29
396032--396095	25	2.4	25	80	14	67	57	0	7	34	1.27
396040--396169	68	1.9	69	87	4	192	53	0	6	38	1.33
396133--396214	31	2.8	29	78	10	94	51	2	4	41	1.36
396133--396199	29	2.2	29	86	5	89	56	2	4	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408113--408174	31	2.0	30	90	3	97	38	11	8	41	1.70
409223--409276	19	2.7	19	80	11	56	51	1	1	44	1.22
410033--410069	14	2.6	15	83	8	51	59	0	2	37	1.12
412827--412859	16	2.0	17	94	5	59	33	6	12	48	1.65
413065--413121	19	3.0	20	73	19	59	52	1	0	45	1.11
413085--413138	22	2.6	19	82	14	54	53	0	1	44	1.11
416990--417019	3	10.0	3	92	0	51	33	33	3	30	1.74
417302--417347	21	2.2	21	84	0	56	30	10	28	30	1.91
417310--417367	21	2.8	21	89	0	89	20	13	29	36	1.91
420020--420046	3	9.0	3	100	0	54	66	0	0	33	0.92
421364--421983	128	4.9	128	96	0	1152	23	24	19	33	1.97
422166--422260	28	3.2	28	82	8	91	40	4	3	52	1.37
422166--422235	34	2.1	34	91	0	113	38	4	2	54	1.35
422777--422868	21	4.4	21	83	5	114	21	27	31	19	1.97
424589--424677	34	2.7	31	79	6	88	58	2	0	39	1.11
424589--424668	34	2.4	33	81	8	92	60	1	0	38	1.05
425799--425849	19	2.6	20	90	3	77	43	23	17	15	1.88
425799--426003	20	10.1	20	73	8	101	40	19	20	19	1.92
425903--426052	43	3.6	41	81	7	169	35	18	26	20	1.95
425924--426052	20	6.3	20	87	5	168	34	17	27	20	1.95
426502--426819	20	15.6	20	78	7	183	38	19	23	17	1.93
425350--426755	703	2.0	688	94	5	2444	38	16	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426626--426817	83	2.3	83	89	2	282	36	18	26	18	1.94
426626--426817	40	4.7	40	81	5	231	36	18	26	18	1.94
426810--426849	20	2.0	20	90	0	62	52	17	17	12	1.74
426750--426839	40	2.2	40	84	0	108	40	20	25	14	1.90
426927--426995	6	11.5	6	98	0	129	31	52	15	0	1.44
427681--427721	5	7.6	5	97	2	55	0	19	53	26	1.45
427684--427725	6	7.5	6	97	2	63	0	16	54	28	1.42
427830--427960	20	6.4	20	81	5	145	22	23	16	36	1.94
427841--427981	43	3.3	43	83	5	198	22	24	17	36	1.95
427830--427960	40	3.2	40	82	6	172	22	23	16	36	1.94
427828--428085	20	12.6	20	73	9	126	19	22	19	39	1.93
428035--428085	19	2.6	20	90	3	77	15	17	23	43	1.88
434317--434598	21	13.6	21	72	11	224	21	19	24	35	1.96
434389--434619	63	3.7	62	78	10	247	22	19	23	35	1.96
434447--434619	82	2.1	84	93	2	296	21	18	23	36	1.95
434403--434634	21	11.1	21	71	18	146	21	19	21	36	1.95
434761--434811	21	2.4	21	86	0	75	29	31	19	19	1.97
434803--434851	21	2.3	21	96	0	89	44	16	16	22	1.86
434736--434869	63	2.1	63	84	5	173	36	22	17	23	1.95
434736--434869	21	6.4	19	73	14	61	36	22	17	23	1.95
439048--439074	14	1.9	14	100	0	54	51	29	18	0	1.46
451978--452055	35	2.2	35	93	0	129	43	20	0	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451978--452071	35	2.7	35	88	0	116	42	24	0	32	1.55
452215--452501	143	2.0	145	86	4	409	36	5	9	47	1.60
452997--453077	35	2.3	36	82	2	101	33	1	23	41	1.62
454290--454332	18	2.2	20	84	15	56	39	4	0	55	1.20
454309--454344	18	1.9	19	88	5	56	36	8	0	55	1.30
456953--456977	12	2.1	12	100	0	50	40	8	36	16	1.77
457006--457061	29	1.9	29	96	0	103	10	37	30	21	1.87
457065--457132	33	2.1	33	88	5	102	11	41	19	27	1.86
457077--457158	33	2.5	33	83	0	92	12	36	24	26	1.91
457136--457188	20	2.7	20	100	0	106	9	30	35	24	1.87
457176--457202	14	1.9	14	100	0	54	11	29	37	22	1.89
457136--457188	10	5.3	10	82	17	74	9	30	35	24	1.87
457958--457997	18	2.2	18	86	8	55	67	7	2	22	1.28
458363--458417	26	2.1	26	83	6	67	36	3	3	56	1.34
458562--458593	17	1.9	17	93	6	57	65	0	0	34	0.93
459542--459577	2	18.0	2	100	0	72	50	0	0	50	1.00
460672--460713	15	2.7	15	86	13	59	52	2	0	45	1.13
462923--462996	37	2.0	36	84	7	96	45	4	1	48	1.29
468969--469031	32	2.0	32	90	0	99	42	15	1	39	1.57
471815--471931	20	5.8	20	69	4	90	18	18	23	38	1.93
471838--471911	21	3.6	21	70	3	78	21	17	25	35	1.95
471822--471934	41	2.8	41	94	0	199	18	18	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472567--472623	5	10.8	5	88	7	78	0	19	45	35	1.50
474501--474619	62	1.9	62	88	6	179	24	24	16	34	1.95
474523--474657	21	6.5	21	70	5	87	22	23	17	35	1.95
474554--474657	41	2.5	41	81	6	113	25	23	16	35	1.95
474647--474700	20	2.6	21	79	5	65	38	18	22	20	1.93
475287--475413	65	2.0	65	92	3	211	11	25	22	40	1.87
475349--475429	19	4.5	19	73	16	73	13	24	23	38	1.91
475287--475413	33	3.9	33	93	3	204	11	25	22	40	1.87
475287--475438	14	8.8	19	70	19	77	11	24	21	42	1.86
477112--477294	91	2.0	90	87	8	264	22	12	18	46	1.81

Tables:   1   2   3