genome.fa.s8052.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008052.1 Hibiscus syriacus cultivar Beakdansim tig00110547_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  532719

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513317--513349	14	2.4	14	94	0	57	6	33	39	21	1.78
516858--516913	28	2.0	28	85	0	76	23	17	28	30	1.97
521762--521809	23	2.1	23	84	7	62	64	2	12	20	1.37
521888--521998	23	5.1	21	73	21	79	63	1	2	32	1.19
521894--522007	21	4.9	22	71	23	74	62	1	2	33	1.19
522133--522183	22	2.4	22	90	9	79	68	0	0	31	0.90
522133--522193	22	2.8	22	85	9	72	67	3	1	27	1.16
523540--523697	21	7.8	20	72	7	86	38	25	17	18	1.92
523664--523837	40	4.3	40	81	3	172	36	25	19	18	1.95
523664--523814	20	7.6	20	84	3	187	34	25	20	19	1.96
523664--523837	60	2.9	60	81	0	213	36	25	19	18	1.95
523983--524037	22	2.5	22	81	0	74	23	40	16	20	1.91
524218--524288	33	2.2	33	89	0	106	11	23	16	47	1.79
524378--524441	20	3.1	21	78	12	80	46	15	26	10	1.79
524377--524486	33	3.1	35	85	10	111	46	19	25	9	1.79
524377--524440	21	3.1	21	76	13	78	48	15	26	9	1.75
524428--524481	14	3.5	14	73	22	54	42	24	25	7	1.80
524417--524486	33	2.1	33	97	0	131	47	20	25	7	1.75
524492--524574	19	4.7	19	78	14	88	10	24	22	42	1.85
524514--524588	14	4.7	15	76	20	64	9	25	24	41	1.84
524492--524596	51	2.0	52	92	1	176	10	24	20	43	1.83
526265--526639	93	4.1	93	93	5	649	22	13	18	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526700--526809	19	6.5	19	69	24	93	46	28	18	7	1.75
526722--526809	32	2.8	32	87	8	126	44	28	19	7	1.78
526827--526882	14	3.7	14	76	17	58	10	21	23	44	1.83
526810--526900	32	2.8	33	88	5	132	12	18	21	47	1.81
526873--526922	19	2.7	18	84	6	73	12	14	26	48	1.78
528839--528873	14	2.6	14	95	4	63	34	0	22	42	1.54
528978--529075	19	5.5	19	83	14	129	43	17	23	15	1.87
528978--529092	51	2.2	52	92	4	189	42	17	25	14	1.87
529117--529225	19	6.3	19	73	24	116	13	22	18	44	1.85
529082--529195	52	2.3	49	92	4	183	15	21	18	43	1.87
529136--529225	33	2.8	33	94	5	157	13	23	18	44	1.85
529283--529377	19	5.2	19	83	13	137	45	16	23	14	1.85
529283--529399	53	2.2	53	96	1	218	44	17	23	14	1.85
531690--531714	12	2.1	12	100	0	50	0	28	0	72	0.86
532608--532717	20	5.6	20	86	3	161	20	17	22	40	1.92
532608--532719	40	2.8	40	95	2	201	19	16	24	39	1.92

Tables:   1   2   3

The End!