genome.fa.s8054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008054.1 Hibiscus syriacus cultivar Beakdansim tig00110549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  738886

Tables:   1   2   3   

This is table  1  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--112	52	2.1	53	98	1	217	13	23	16	47	1.81
47--140	34	2.8	33	88	6	136	12	20	20	46	1.82
2431--2455	13	1.9	13	100	0	50	0	24	0	76	0.80
2629--2675	24	2.0	24	87	8	69	38	21	14	25	1.92
3346--3714	20	18.5	20	88	3	458	20	18	26	34	1.96
8572--8620	26	1.9	26	87	4	73	36	2	4	57	1.30
8813--8849	14	2.6	14	91	0	56	59	16	0	24	1.37
10268--10298	3	10.3	3	100	0	62	32	0	0	67	0.91
21629--21681	21	2.5	21	84	0	79	22	9	5	62	1.47
26490--26561	31	2.3	31	87	0	99	33	8	6	51	1.59
26605--26760	77	2.0	76	96	1	285	31	10	7	50	1.64
27186--27235	17	3.1	17	68	26	54	46	12	6	36	1.66
35565--35634	31	2.3	31	87	5	97	24	27	11	37	1.89
37670--37696	11	2.5	11	100	0	54	51	0	0	48	1.00
37901--37958	18	3.3	18	70	4	64	48	20	18	12	1.80
58691--58721	2	15.5	2	100	0	62	51	0	0	48	1.00
60403--60439	6	6.2	6	100	0	74	48	0	35	16	1.46
62572--62634	3	21.3	3	78	15	69	34	0	1	63	1.04
62571--62633	28	2.3	27	83	10	74	36	0	1	61	1.05
63051--63082	14	2.2	15	94	5	57	71	12	15	0	1.14
63340--63368	13	2.2	13	100	0	58	0	31	62	6	1.22
71244--71673	83	5.2	83	92	1	720	27	12	21	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71244--71673	165	2.6	166	93	1	747	27	12	21	38	1.90
73881--73932	22	2.4	22	96	0	95	36	9	15	38	1.80
74602--75719	76	14.8	76	97	1	2104	21	20	22	35	1.96
74602--75719	303	3.7	304	97	1	2104	21	20	22	35	1.96
75855--75962	3	35.0	3	87	5	153	37	0	0	62	1.02
76377--76407	14	2.2	14	100	0	62	70	12	16	0	1.16
77245--77345	53	1.9	53	81	4	123	27	5	4	61	1.40
77317--77392	35	2.2	35	78	4	82	34	6	1	57	1.33
88678--88708	2	15.5	2	100	0	62	51	0	0	48	1.00
90436--90469	16	2.1	16	94	0	59	32	8	26	32	1.87
91220--91251	15	2.1	16	94	5	57	50	18	25	6	1.70
96444--96833	37	10.4	36	73	18	243	44	3	5	45	1.46
96683--96819	70	2.0	69	81	11	163	45	4	6	43	1.50
96849--96893	23	2.0	23	86	8	65	22	2	2	73	1.05
100651--100702	20	2.4	22	75	12	54	59	0	1	38	1.08
107805--107865	21	2.9	21	95	0	104	26	39	24	9	1.86
111450--111608	59	2.7	60	81	2	158	33	20	5	40	1.75
112112--112141	6	5.2	6	96	4	53	33	0	0	66	0.92
116067--116105	19	2.1	19	100	0	78	41	10	10	38	1.73
117074--117134	20	3.0	20	70	4	50	26	1	19	52	1.55
128653--128724	3	24.3	3	97	2	137	66	0	0	33	0.92
129062--129158	48	2.0	48	89	0	149	9	26	24	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130313--130371	3	19.7	3	100	0	118	66	0	33	0	0.92
134738--134768	2	15.5	2	100	0	62	48	0	0	51	1.00
135860--135909	18	3.1	15	76	18	55	42	6	24	28	1.78
137767--137802	18	2.0	18	94	0	63	69	0	5	25	1.10
149503--149540	17	2.1	18	90	9	60	36	7	5	50	1.54
154352--154383	2	16.0	2	100	0	64	50	0	0	50	1.00
158465--158504	19	2.1	19	85	4	53	35	10	7	47	1.65
165884--166013	65	2.0	64	96	1	242	32	13	25	29	1.93
167003--167073	2	35.5	2	100	0	142	50	0	0	49	1.00
167073--167103	2	15.5	2	100	0	62	51	0	48	0	1.00
169081--169110	4	7.2	4	92	7	51	53	23	0	23	1.46
169108--169136	2	14.5	2	100	0	58	51	0	0	48	1.00
175994--176030	20	1.9	19	89	10	58	45	10	24	18	1.81
177273--177312	20	1.9	22	85	10	57	37	7	17	37	1.78
180406--180462	29	2.0	29	89	6	89	14	35	29	21	1.92
180724--180781	29	2.0	29	83	6	73	22	24	36	17	1.95
182024--182138	53	2.2	53	80	0	131	46	9	13	30	1.76
187715--187763	23	2.1	24	84	3	64	28	10	14	46	1.77
195566--195648	36	2.3	36	83	10	107	12	19	37	31	1.88
195686--195744	6	9.8	6	90	0	82	28	30	20	20	1.97
197337--197433	2	48.5	2	100	0	194	49	0	0	50	1.00
198270--198311	22	2.0	21	81	13	50	30	0	23	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198599--198653	21	2.7	21	86	5	69	34	1	5	58	1.32
200917--200985	35	1.9	37	88	5	106	46	4	0	49	1.21
201706--201740	17	2.1	17	94	0	61	51	0	20	28	1.47
201945--201970	2	13.0	2	100	0	52	50	0	0	50	1.00
202165--202193	15	1.9	15	100	0	58	13	13	13	58	1.63
203185--203212	2	14.0	2	100	0	56	50	0	0	50	1.00
206138--206209	35	2.1	35	97	0	135	19	11	26	43	1.84
209422--209477	26	2.2	26	100	0	112	32	30	7	30	1.84
212627--212680	22	2.5	21	74	17	56	61	0	1	37	1.07
218085--218135	26	2.0	26	92	0	84	25	3	56	13	1.54
220435--220667	125	1.9	126	98	0	450	40	8	19	30	1.82
220647--220687	20	2.0	20	95	0	73	39	12	19	29	1.88
221365--221409	21	2.1	22	84	12	58	24	24	28	22	1.99
225286--225337	27	2.0	27	88	3	79	34	13	19	32	1.90
226931--227143	36	5.9	36	86	4	304	37	19	23	19	1.94
226926--227143	72	3.0	72	94	0	382	38	19	23	18	1.93
227194--227244	27	1.9	27	88	4	77	35	9	19	35	1.85
228184--228282	47	2.1	46	83	1	117	32	11	9	47	1.70
228932--228986	21	2.6	21	91	0	83	18	23	27	30	1.97
228931--228999	21	3.3	21	83	0	75	20	24	23	31	1.98
228996--229483	42	11.7	42	95	0	872	35	23	19	21	1.96
229839--230103	133	2.0	135	96	3	500	27	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230234--230702	225	2.1	228	90	2	737	28	12	18	40	1.87
232285--232322	18	2.1	18	90	0	58	36	2	5	55	1.37
232734--232897	90	1.8	90	86	0	238	33	19	12	34	1.90
236809--236840	3	10.7	3	93	0	55	0	31	0	68	0.90
250613--250646	15	2.3	15	89	0	50	50	0	0	50	1.00
254634--254692	24	2.4	26	83	8	70	32	1	3	62	1.21
275202--275345	71	2.0	72	94	4	256	36	8	8	47	1.64
276417--276465	13	3.8	13	78	5	55	32	22	6	38	1.79
277943--277975	12	2.8	12	100	0	66	36	33	6	24	1.80
279126--279151	2	13.0	2	100	0	52	50	0	0	50	1.00
279217--279251	16	2.2	16	89	0	52	28	8	25	37	1.85
290325--290389	21	3.0	20	82	8	76	50	15	1	32	1.53
290684--290735	22	2.4	21	78	9	61	73	3	0	23	1.00
301667--301748	31	2.6	31	79	7	103	20	10	10	57	1.63
303653--303693	20	2.0	21	85	4	57	41	0	14	43	1.45
306997--307078	39	2.1	39	95	0	146	51	10	7	30	1.64
308024--308102	39	2.0	39	90	0	122	35	16	12	35	1.87
320797--320909	35	3.3	35	79	12	126	44	20	0	34	1.58
321949--322060	35	3.2	33	85	9	143	35	0	20	42	1.58
327212--327278	31	2.2	31	88	0	98	56	0	22	20	1.42
328266--328330	29	2.3	29	89	2	96	18	16	13	50	1.78
333715--333821	50	2.1	51	96	3	207	36	17	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335099--335155	29	2.0	29	85	0	78	26	12	19	42	1.86
343625--344046	208	2.0	214	96	2	793	36	10	17	36	1.84
346590--346634	21	2.1	21	83	0	54	55	8	6	28	1.56
355248--355473	114	2.0	113	96	3	420	24	19	11	44	1.84
356502--356714	108	2.0	108	81	9	256	31	15	7	44	1.76
364449--364767	156	2.0	156	86	6	446	30	21	21	27	1.98
367151--367269	35	3.3	37	86	8	156	32	5	18	42	1.74
371768--371832	20	3.5	20	65	28	52	29	7	20	43	1.79
371760--371878	35	3.3	36	88	5	152	32	5	18	42	1.74
376051--376094	22	2.0	22	95	0	79	38	13	18	29	1.89

Tables:   1   2   3