genome.fa.s8054.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008054.1 Hibiscus syriacus cultivar Beakdansim tig00110549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  738886

Tables:   1   2   3   

This is table  3  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545255--545316	19	3.3	19	78	15	58	37	1	0	61	1.06
545778--545837	31	1.9	31	93	0	102	43	10	6	40	1.64
571946--571988	14	2.8	16	86	13	63	30	0	0	69	0.88
573697--573768	26	3.0	25	73	24	73	68	5	9	16	1.37
574963--575039	6	11.7	7	76	16	60	66	1	1	31	1.08
574972--575039	3	22.3	3	77	14	68	66	1	1	30	1.10
574972--575059	13	6.8	13	76	13	85	63	1	2	32	1.14
574973--575056	16	4.9	17	78	12	75	63	1	2	33	1.15
575103--575230	37	3.5	36	82	6	141	44	5	4	45	1.47
575103--575240	36	3.8	35	77	12	136	44	5	4	44	1.47
575119--575361	122	2.0	117	93	5	416	42	6	4	45	1.51
575259--575351	32	2.7	34	83	9	102	40	6	4	48	1.48
575338--575431	36	2.6	37	80	14	108	46	7	2	43	1.43
576083--576924	84	10.2	83	78	6	809	23	20	25	30	1.99
576084--576905	164	5.0	166	81	5	812	24	20	25	30	1.98
579920--579964	19	2.4	19	92	3	74	66	8	11	13	1.44
583137--583232	19	4.9	20	77	12	67	67	3	2	27	1.16
583161--583234	3	24.3	3	78	13	80	66	1	1	31	1.09
583151--583229	13	6.3	13	81	7	92	67	2	2	27	1.17
583162--583251	19	4.8	19	75	18	73	63	1	2	33	1.14
583262--583358	36	2.6	36	81	10	99	49	5	3	42	1.40
583261--583444	38	4.9	37	76	12	162	46	6	3	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583317--583568	126	2.1	118	91	8	398	42	6	4	46	1.49
583449--583536	40	2.2	39	82	6	106	39	6	5	47	1.54
583495--583552	28	2.0	29	90	3	91	44	8	3	43	1.51
583507--583620	36	3.3	35	82	8	137	45	7	1	45	1.40
583535--583632	34	2.8	34	77	11	101	46	7	2	43	1.42
587396--587448	27	2.0	27	96	3	99	18	18	22	39	1.92
587573--587873	150	2.0	151	95	2	527	37	11	8	42	1.71
591361--591419	29	2.0	29	96	0	109	23	13	11	50	1.74
596036--596094	29	2.0	29	100	0	118	23	13	13	49	1.78
598290--598331	21	2.0	20	86	4	57	38	14	7	40	1.73
602976--603020	21	2.1	21	87	0	63	31	28	24	15	1.96
603375--603414	18	2.4	16	87	8	53	37	5	17	40	1.72
603375--603415	16	2.4	18	88	8	59	36	4	17	41	1.71
603891--604015	31	4.0	31	86	2	171	21	20	21	36	1.96
607057--607101	21	2.1	21	87	0	63	31	28	24	15	1.96
607454--607493	18	2.4	16	87	8	53	37	5	17	40	1.72
607454--607494	16	2.4	18	88	8	59	36	4	17	41	1.71
607971--608126	31	5.0	31	91	1	242	21	20	21	36	1.95
610801--610829	6	4.8	6	100	0	58	17	17	13	51	1.76
620245--620620	118	3.0	127	88	8	576	54	5	7	32	1.52
620504--620530	10	2.7	10	100	0	54	51	0	18	29	1.46
620505--620561	27	2.2	26	81	9	62	56	1	12	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631120--631172	2	27.0	2	96	3	99	49	0	0	50	1.00
638705--638736	15	2.1	16	94	5	57	12	21	15	50	1.77
642726--642768	20	2.1	21	86	4	61	69	13	0	16	1.19
647863--647956	29	3.2	29	71	16	84	39	17	3	40	1.65
648032--648159	57	2.2	57	79	10	134	35	6	22	35	1.80
651597--651636	21	1.9	21	89	0	62	15	27	25	32	1.95
658276--658301	3	8.7	3	100	0	52	69	0	30	0	0.89
671935--672031	48	2.0	48	97	0	185	34	13	20	31	1.91
681161--681365	74	2.8	76	85	7	269	20	23	31	24	1.98
681945--681988	17	2.6	17	89	7	63	59	27	0	13	1.35
683068--683230	81	2.0	81	98	0	317	36	16	15	31	1.91
687579--687618	21	1.9	21	85	10	55	35	10	2	52	1.48
689530--689725	75	2.6	76	84	4	245	19	21	33	25	1.97
696596--696677	29	2.8	29	92	1	128	32	13	12	41	1.81
699337--699379	21	2.0	21	81	0	50	27	30	25	16	1.97
700504--700809	30	10.2	30	98	0	594	23	19	23	33	1.97
703081--703162	29	2.8	29	94	1	137	32	14	12	40	1.83
709457--709503	10	4.7	10	79	7	51	78	6	2	12	1.02
709451--709492	20	2.1	20	86	8	59	73	4	2	19	1.12
709535--709574	16	2.4	18	80	16	50	30	12	5	52	1.60
709428--709687	109	2.3	109	84	6	324	48	7	4	39	1.51
709623--709675	27	2.0	25	82	13	63	32	7	0	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714393--714458	34	1.9	34	90	0	105	37	21	21	19	1.94
716625--716710	37	2.4	36	84	5	104	40	16	10	32	1.82
722711--722749	20	2.0	20	89	0	60	46	10	5	38	1.60
725548--725585	17	2.4	16	86	8	51	34	7	2	55	1.43
735359--735402	21	2.1	21	91	0	70	38	11	22	27	1.88
735463--735506	21	2.1	21	86	0	61	25	20	27	27	1.99
735677--735791	7	16.7	7	96	3	216	0	13	57	28	1.37
735679--735791	48	2.4	48	100	0	226	0	14	57	28	1.37
735787--738868	7	449.7	7	90	5	3367	6	14	51	28	1.67

Tables:   1   2   3

The End!