Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008060.1 Hibiscus syriacus cultivar Beakdansim tig00110555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135883

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2961--2999
8
5.0
8
84
6
53
10
17
12
58
1.61
4177--4224
9
5.2
9
80
14
62
85
6
8
0
0.74
4175--4230
15
3.8
16
75
15
59
82
7
10
0
0.85
4177--4240
22
3.0
22
84
6
78
81
6
12
0
0.87
4177--4230
28
1.9
28
88
7
83
85
5
9
0
0.75
4817--4860
22
2.0
22
91
8
72
38
22
11
27
1.88
5796--6047
36
7.4
36
72
16
198
26
19
13
41
1.88
5793--6165
200
1.9
200
80
8
445
27
20
11
40
1.87
6006--6176
67
2.6
66
84
4
204
31
22
9
36
1.86
6801--7212
102
4.0
104
89
5
603
32
27
17
22
1.96
9552--9609
26
2.3
26
88
5
84
24
15
39
20
1.91
23480--23546
32
2.1
32
86
10
93
31
32
0
35
1.58
27484--27532
16
3.0
16
77
14
55
44
2
2
51
1.24
27470--27532
33
1.9
33
84
9
85
41
4
1
52
1.32
27356--27567
74
2.8
74
90
2
325
38
5
5
50
1.48
31578--31742
53
3.1
53
89
0
240
36
18
17
26
1.93
32691--32735
20
2.2
21
84
4
56
44
28
2
24
1.66
43626--43659
11
2.9
12
86
4
52
67
2
8
20
1.31
43626--43672
24
2.0
24
88
12
71
65
4
10
19
1.39
43626--43683
24
2.5
24
83
13
59
68
3
12
15
1.32
44904--44951
24
2.0
24
83
0
60
43
18
6
31
1.75
44914--44963
24
2.1
24
84
0
64
42
18
4
36
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45089--45139
21
2.3
21
80
10
57
39
15
7
37
1.77
45609--45724
51
2.3
50
82
7
135
52
2
18
26
1.58
54711--54750
20
2.0
21
85
5
55
77
5
12
5
1.09
58377--58553
91
1.9
91
94
0
309
45
6
9
38
1.62
60506--60545
21
2.0
21
85
5
55
35
10
15
40
1.80
61708--61785
39
2.1
37
81
13
88
28
5
7
58
1.47
63412--63534
64
1.9
64
83
6
160
30
21
17
31
1.96
63440--63599
64
2.5
64
84
2
187
30
21
16
30
1.96
70906--71085
65
2.8
64
79
7
193
28
23
17
29
1.97
83766--83791
9
2.9
9
100
0
52
11
0
0
88
0.52
85863--85923
20
3.0
20
81
9
77
21
36
29
13
1.91
85862--85924
22
3.0
22
83
4
85
20
38
28
12
1.89
93263--93296
12
2.8
12
100
0
68
35
8
17
38
1.81
95801--96607
429
1.9
415
85
4
1112
30
10
11
47
1.74
96616--96656
13
3.1
13
89
3
55
14
12
0
73
1.11
96679--96719
15
2.7
15
92
3
64
36
31
4
26
1.78
97287--97322
17
2.1
17
89
0
54
22
2
2
72
1.11
112745--112778
17
1.9
18
94
5
61
61
0
0
38
0.96
112724--112847
41
3.0
42
83
7
146
50
0
0
47
1.12
114357--114496
30
4.6
29
78
11
129
16
15
9
58
1.62
118077--118131
16
3.1
18
87
10
78
72
9
18
0
1.10
118060--118185
61
2.1
61
84
11
161
73
7
17
2
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119329--119490
65
2.5
65
80
7
186
28
15
14
41
1.87
119568--119633
31
2.2
31
83
8
82
31
18
13
36
1.90
119713--119997
130
2.2
130
83
2
340
27
30
15
26
1.96
120068--120185
42
2.9
42
82
2
150
25
32
18
23
1.97
120344--120396
3
17.7
3
96
0
97
30
0
0
69
0.88
120858--120892
16
2.2
16
89
0
52
48
17
0
34
1.47
124233--124273
15
2.7
15
84
0
55
19
9
31
39
1.84
127177--127308
30
4.5
30
75
9
103
15
13
10
60
1.59
129215--129324
42
2.6
42
86
1
159
50
19
2
27
1.60
132697--132771
24
3.2
24
79
11
84
40
12
12
36
1.79
134897--135621
134
5.5
133
86
4
901
31
25
15
27
1.95
134897--135620
399
1.8
398
87
3
1078
31
25
15
27
1.95
134899--135621
265
2.7
265
85
4
764
31
25
15
27
1.95

Tables:   1

The End!