genome.fa.s8063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008063.1 Hibiscus syriacus cultivar Beakdansim tig00110560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  602526

Tables:   1   2   

This is table  1  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205--254	25	2.0	25	100	0	100	60	20	12	8	1.57
10799--10837	20	2.0	20	85	10	53	58	5	5	30	1.41
18938--18975	20	1.9	20	88	0	58	26	34	26	13	1.93
25289--25324	14	2.6	14	90	0	54	77	0	0	22	0.76
25289--25323	5	7.2	5	90	6	54	80	0	0	20	0.72
27938--27977	2	20.0	2	100	0	80	0	50	0	50	1.00
38020--38098	27	3.0	26	85	5	113	0	18	0	81	0.70
38020--38093	32	2.3	32	95	2	130	0	18	0	81	0.70
38020--38093	5	13.8	5	84	12	94	0	18	0	81	0.70
42288--42334	2	23.5	2	100	0	94	48	0	0	51	1.00
63003--63035	16	1.9	18	88	11	52	45	18	0	36	1.49
63204--63287	33	2.5	33	94	3	141	40	0	0	59	0.97
63229--63280	11	4.7	11	77	17	54	42	0	0	57	0.98
64361--64526	73	2.4	71	86	6	232	40	16	16	26	1.89
68394--68442	25	2.0	25	84	8	64	59	4	8	28	1.45
69465--69494	15	2.1	14	93	6	51	20	40	16	23	1.91
72149--72222	29	2.5	31	75	22	77	43	2	1	52	1.23
73062--73097	12	3.0	12	91	0	63	33	5	25	36	1.79
73113--73176	29	2.2	29	100	0	128	43	17	20	18	1.88
73372--73413	15	2.8	15	100	0	84	19	26	28	26	1.98
91105--91174	35	1.9	37	83	11	92	40	20	21	18	1.92
97370--97402	16	1.9	18	88	11	52	45	18	0	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97572--97656	33	2.5	34	92	5	145	41	0	0	58	0.98
98732--98895	71	2.4	70	88	4	244	40	16	16	26	1.89
102766--102814	25	2.0	25	84	8	64	59	4	8	28	1.45
103829--103858	15	2.1	14	93	6	51	20	40	16	23	1.91
106534--106607	29	2.5	31	75	22	77	43	2	1	52	1.23
107454--107489	12	3.0	12	91	0	63	33	5	25	36	1.79
107505--107578	29	2.6	29	95	2	132	44	16	20	18	1.87
107764--107805	15	2.8	15	100	0	84	19	26	28	26	1.98
125745--125814	35	1.9	37	83	11	92	40	20	21	18	1.92
126125--126173	2	26.5	2	80	15	61	55	0	0	44	0.99
126336--126361	12	2.2	12	100	0	52	34	7	7	50	1.60
127632--127671	21	1.9	21	84	0	53	30	20	25	25	1.99
131214--131260	20	2.3	20	96	0	85	25	21	23	29	1.99
137182--137319	60	2.3	60	81	2	152	35	17	15	31	1.91
138075--138101	2	13.5	2	100	0	54	51	0	0	48	1.00
138230--138291	23	2.7	23	84	0	70	38	4	8	48	1.54
140311--140368	29	2.0	29	90	6	91	34	27	8	29	1.87
140499--140584	35	2.5	35	82	0	91	40	19	1	38	1.60
140553--140595	21	2.0	21	100	0	86	46	13	0	39	1.44
140717--140750	16	2.0	18	88	11	54	26	2	5	64	1.30
141214--141461	130	1.9	130	94	0	433	37	13	14	35	1.85
145174--145219	22	2.0	22	87	4	65	58	6	2	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146263--146317	21	2.6	21	94	0	92	18	21	29	30	1.97
146637--146661	6	4.2	6	100	0	50	0	16	48	36	1.46
147095--147152	28	2.1	28	86	0	80	39	10	12	37	1.77
149641--149684	6	7.3	6	100	0	88	15	68	0	15	1.22
152737--152799	31	2.0	32	93	3	110	31	12	11	44	1.78
167222--167248	2	13.5	2	100	0	54	51	0	0	48	1.00
170964--170989	2	13.0	2	100	0	52	50	0	0	50	1.00
171922--171960	4	9.8	4	100	0	78	51	23	0	25	1.49
171911--171980	8	8.8	8	93	0	77	50	12	0	37	1.41
175939--175988	24	2.0	26	84	7	68	44	0	8	48	1.32
181189--181240	9	6.1	9	76	13	56	34	0	1	63	1.06
181188--181237	17	3.0	17	91	2	75	36	0	4	60	1.16
186515--186554	21	2.0	21	85	5	55	52	5	0	42	1.23
186568--186600	17	1.9	17	88	11	50	36	3	0	60	1.12
193090--193129	18	2.1	18	86	9	53	52	0	20	27	1.46
193947--193992	2	23.0	2	100	0	92	50	0	0	50	1.00
194077--194101	12	2.1	12	100	0	50	16	0	8	76	1.02
196109--196280	60	2.8	60	83	6	186	33	18	5	42	1.74
198209--198249	9	4.3	9	84	9	55	14	31	29	24	1.95
198263--198320	5	10.8	5	78	14	62	18	51	22	6	1.70
198263--198327	22	3.0	22	100	0	130	18	49	23	9	1.76
198245--198293	17	2.9	17	96	0	89	20	46	22	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205489--205547	20	2.9	21	85	7	86	18	27	23	30	1.98
205510--205579	10	7.3	10	72	24	62	15	30	28	25	1.96
205510--205577	19	3.5	20	88	9	90	16	27	29	26	1.97
205540--205579	9	4.3	9	84	6	53	15	30	30	25	1.95
205576--205635	22	3.0	21	76	23	74	20	46	23	10	1.80
205575--205623	17	2.9	17	96	0	89	20	46	22	10	1.80
205625--205655	7	4.4	7	100	0	62	16	29	29	25	1.96
208002--208043	20	2.2	19	91	4	66	23	23	9	42	1.83
208561--208599	20	2.0	20	90	5	62	46	0	0	53	1.00
222405--222470	33	2.0	34	90	3	107	28	10	21	39	1.86
223357--223392	16	2.2	17	90	5	56	47	0	2	50	1.15
228169--228244	39	2.1	36	83	13	95	47	9	2	40	1.49
228175--228239	19	3.2	21	64	28	50	47	10	3	38	1.54
234816--234844	2	14.5	2	100	0	58	51	0	0	48	1.00
238082--238136	27	2.0	26	83	13	67	27	14	1	56	1.49
247335--247375	21	2.0	21	95	0	73	43	0	0	56	0.99
253912--253970	24	2.5	24	94	0	100	11	15	18	54	1.71
256157--256274	57	2.1	57	88	3	175	20	18	39	21	1.92
269757--269924	83	2.0	81	89	4	257	45	14	16	23	1.84
279174--279198	9	2.8	9	100	0	50	8	0	0	92	0.40
283428--283472	21	2.1	21	83	0	54	37	20	15	26	1.92
286737--286808	22	3.3	22	65	27	62	31	9	6	51	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286735--286824	44	2.0	44	97	0	171	35	10	6	47	1.63
292575--292612	19	2.0	19	94	0	67	55	5	0	39	1.23
300163--300248	30	2.9	29	79	5	82	44	5	16	33	1.71
305039--305079	21	1.9	22	90	5	66	41	2	14	41	1.59
316389--316569	90	2.0	90	100	0	362	31	22	11	35	1.89
328594--328643	26	2.0	25	84	4	64	50	0	2	48	1.12
339803--340046	36	6.8	36	93	0	362	20	28	22	28	1.98
342937--342974	19	2.0	19	89	0	58	42	10	44	2	1.52
342956--343043	33	2.7	33	85	0	122	37	12	40	9	1.75
355153--355196	19	2.2	20	88	4	63	43	2	0	54	1.12
362919--362982	31	2.1	31	87	0	92	48	4	25	21	1.69
364348--364419	22	3.4	22	83	14	105	34	26	19	19	1.96
364518--364548	6	5.2	6	100	0	62	35	48	16	0	1.46
365223--365260	6	6.5	6	93	3	60	0	15	55	28	1.41
365365--365474	20	5.4	20	86	8	143	17	20	26	35	1.95
366581--366605	13	1.9	13	100	0	50	24	16	16	44	1.86
370693--370764	30	2.4	30	85	2	99	41	6	12	38	1.70
374862--374896	18	1.9	18	88	0	52	20	22	31	25	1.98
375403--375467	21	3.1	21	97	0	121	27	24	24	23	2.00
377705--377766	32	1.9	32	83	6	81	20	24	24	30	1.99
380814--380890	29	2.7	29	97	0	145	14	35	27	23	1.93
389830--389878	14	3.4	14	81	10	62	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389824--389873	16	3.2	16	80	11	68	46	0	4	50	1.20
403302--403331	3	10.0	3	92	0	51	30	0	0	70	0.88
403940--404059	58	2.0	60	93	6	210	25	21	26	26	2.00
404036--404476	51	8.9	51	81	11	510	38	26	16	18	1.91
404054--404476	97	4.3	101	85	10	545	38	27	15	18	1.91
416127--416183	22	2.7	22	79	15	66	42	8	0	49	1.34
416477--416501	12	2.1	12	100	0	50	40	0	28	32	1.57
426841--426884	23	1.9	23	100	0	88	45	11	22	20	1.83
426932--427016	37	2.3	38	86	8	113	37	4	16	41	1.69
431120--431145	7	3.7	7	100	0	52	42	0	15	42	1.47

Tables:   1   2