Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008063.1 Hibiscus syriacus cultivar Beakdansim tig00110560_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  602526

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431764--431846
32
2.6
32
78
5
87
39
0
2
57
1.12
433570--433617
21
2.3
21
85
0
60
25
39
12
22
1.89
433621--433714
21
4.5
21
92
5
129
18
35
26
20
1.95
434232--434328
28
3.2
28
70
20
77
53
4
3
39
1.36
434715--435445
126
5.8
126
98
0
1399
32
20
25
21
1.98
435513--435553
8
5.2
8
82
5
57
36
29
0
34
1.58
438539--438576
13
3.0
13
88
3
60
44
0
0
55
0.99
438590--438647
23
2.6
23
94
5
102
44
12
3
39
1.58
439400--439424
2
12.5
2
100
0
50
48
0
0
52
1.00
441856--441924
29
2.4
29
81
11
81
42
10
14
33
1.79
441856--441932
29
2.7
29
80
6
77
40
11
18
29
1.86
459480--459585
53
2.0
53
94
0
185
20
19
8
50
1.73
461717--461746
2
15.0
2
100
0
60
50
0
0
50
1.00
464025--464058
13
2.6
13
100
0
68
32
0
14
52
1.42
465203--465308
36
2.9
36
95
0
185
27
21
19
31
1.98
465563--465627
27
2.4
28
82
5
80
38
38
7
15
1.76
478317--478344
7
4.0
7
100
0
56
57
14
14
14
1.66
484755--484818
17
3.5
19
72
10
62
53
29
12
4
1.59
503778--503811
17
2.0
17
100
0
68
52
23
23
0
1.47
510837--510878
2
21.0
2
100
0
84
50
0
0
50
1.00
517033--517257
64
3.5
64
81
6
208
32
20
20
27
1.97
517551--517600
12
4.2
12
82
7
66
32
6
24
38
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
517745--517791
15
3.1
15
100
0
94
14
19
31
34
1.92
537969--538007
2
19.5
2
100
0
78
51
0
0
48
1.00
548888--548923
2
18.5
2
94
5
65
50
0
0
50
1.00
571089--571171
36
2.3
36
93
0
139
36
4
24
34
1.77
576967--577024
20
2.9
20
89
0
89
37
5
27
29
1.78
577885--577968
3
27.0
3
74
25
61
67
0
0
32
0.91
577880--577981
15
7.1
15
75
20
85
66
0
0
33
0.92
577880--577981
12
9.1
12
71
26
66
66
0
0
33
0.92
577880--577985
11
9.7
12
76
21
67
66
0
0
33
0.92
580357--580443
18
4.8
17
75
12
68
37
2
1
58
1.18
580383--580446
21
3.2
19
75
16
58
37
1
1
59
1.16
585801--585938
37
3.7
37
85
0
159
42
10
11
35
1.75
586402--586459
10
6.0
10
76
15
50
32
3
0
63
1.11
586473--586498
13
2.0
13
100
0
52
23
7
0
69
1.14
586406--586552
79
1.9
77
81
8
181
27
8
2
61
1.35
586408--586574
79
2.1
78
77
12
173
28
7
1
62
1.32
586554--586600
10
4.5
10
78
19
51
29
2
0
68
1.02
586567--586665
29
3.6
27
74
15
78
31
3
1
64
1.15
586617--586660
18
2.5
18
81
3
54
36
2
0
61
1.09
586550--586693
20
7.2
20
70
18
86
30
3
0
65
1.14
593298--593362
21
3.0
22
93
6
116
27
26
27
18
1.98
593654--593725
29
2.5
29
90
0
108
38
12
11
37
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
594024--594170
65
2.3
66
86
4
201
19
26
27
27
1.99
594150--594192
21
2.0
21
86
0
59
16
25
27
30
1.97
594025--594192
65
2.6
65
83
9
198
19
26
26
27
1.99
600154--600216
21
3.0
20
93
6
108
30
25
28
15
1.96
600504--600572
28
2.4
28
88
7
95
37
13
11
37
1.80
600869--600987
61
2.0
60
85
8
161
19
26
26
26
1.99
600992--601031
19
2.0
20
85
4
55
17
27
30
25
1.97

Tables:   1   2

The End!