genome.fa.s8064.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008064.1 Hibiscus syriacus cultivar Beakdansim tig00110561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  399611

Tables:   1   2   

This is table  2  of  2  ( 229 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173514--173588	3	25.0	3	77	0	78	24	33	6	36	1.81
173524--173605	36	2.3	36	91	0	128	20	32	8	37	1.83
173518--173605	12	7.3	12	85	0	95	21	32	7	37	1.83
173542--173605	18	3.6	18	75	8	67	18	32	9	39	1.83
175067--176045	200	4.9	200	96	0	1814	31	17	15	36	1.90
176164--176212	19	2.6	19	93	0	80	57	10	2	30	1.43
178004--178069	33	2.0	33	90	0	105	22	48	0	28	1.51
178103--178167	21	3.1	21	90	0	103	18	29	10	41	1.84
180359--180401	20	2.3	18	85	14	61	20	16	11	51	1.75
180364--180424	20	3.1	19	79	9	68	18	14	11	55	1.68
180331--180803	181	2.6	182	90	1	734	26	16	13	43	1.86
181867--181904	20	1.9	20	94	0	67	39	10	26	23	1.87
181867--181910	20	2.3	19	84	7	63	40	9	27	22	1.84
184997--185049	27	2.0	27	88	0	79	39	30	7	22	1.82
189096--189193	30	3.2	30	65	18	74	33	12	27	26	1.92
189058--189209	63	2.4	63	91	0	241	37	10	26	25	1.88
194154--195080	302	3.0	310	83	5	1089	22	19	22	36	1.95
199343--199658	120	2.6	122	88	3	458	29	18	33	18	1.95
199657--200117	127	3.6	128	83	5	502	25	27	18	28	1.98
205893--205973	41	2.0	41	95	0	144	38	19	18	23	1.93
212131--212389	131	2.0	131	100	0	518	22	15	23	38	1.92
213961--214028	32	2.2	31	84	7	84	55	5	5	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214647--214680	18	1.9	17	88	5	50	64	5	0	29	1.17
219135--219200	31	2.1	31	100	0	132	36	12	9	42	1.74
220153--220198	20	2.2	20	85	11	58	63	4	6	26	1.38
221995--222046	15	3.2	17	72	22	58	36	21	0	42	1.53
222550--222717	20	8.4	20	70	13	103	35	23	16	24	1.94
222611--222739	40	3.2	40	90	2	188	37	24	15	21	1.92
222587--222783	60	3.3	60	80	13	194	39	22	16	21	1.92
222671--222757	20	4.3	20	79	16	108	42	25	13	18	1.87
222611--222757	40	3.7	40	86	5	147	39	24	14	21	1.91
223325--223378	20	2.7	19	83	8	72	14	16	22	46	1.84
225564--225661	21	4.7	21	71	9	74	25	34	17	22	1.95
225564--225682	42	2.8	41	75	9	105	24	36	18	21	1.95
227011--227184	65	2.6	66	87	7	230	28	2	15	53	1.54
227042--227184	65	2.2	64	92	1	241	30	1	16	51	1.53
227257--227305	20	2.5	20	72	0	53	28	24	26	20	1.99
228312--228348	18	2.1	18	89	0	56	51	10	5	32	1.60
228733--228782	25	2.0	25	92	0	82	44	20	8	28	1.79
228852--228971	20	6.3	20	76	13	110	37	23	21	17	1.94
229336--229376	18	2.3	18	91	0	64	17	2	26	53	1.56
236710--236743	12	2.8	12	90	0	50	14	0	29	55	1.40
237341--237377	16	2.4	16	86	8	51	64	0	5	29	1.15
237514--237579	19	3.5	19	81	6	64	31	13	22	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237534--237723	20	9.6	20	74	8	113	23	14	24	37	1.93
237545--237699	60	2.6	60	78	12	183	23	14	23	37	1.93
243803--243911	24	4.5	24	77	11	116	49	16	14	19	1.80
243805--243874	12	5.8	12	70	12	54	51	18	12	17	1.76
243803--243911	48	2.3	47	85	6	139	49	16	14	19	1.80
246365--246404	13	3.1	13	88	0	53	20	17	42	20	1.89
251245--251269	3	8.3	3	100	0	50	68	0	0	32	0.90
256293--256326	3	11.3	3	100	0	68	32	0	0	67	0.91
258439--258481	22	2.0	22	90	0	68	20	9	11	58	1.61
269154--269224	34	2.1	34	92	2	117	12	8	35	43	1.73
269820--269883	18	3.7	18	93	4	105	29	23	6	40	1.79
275272--275539	134	2.0	134	90	0	419	28	12	20	38	1.89
278626--278761	60	2.3	60	80	2	148	30	23	6	39	1.80
279341--279433	29	3.1	29	75	11	89	46	2	17	34	1.60
279329--279444	60	1.9	60	85	0	160	43	3	18	35	1.67
279352--279444	29	3.1	29	74	6	87	46	3	15	35	1.62
285276--285331	23	2.4	23	75	0	58	42	12	16	28	1.84
287155--287240	41	2.1	42	91	4	140	26	41	0	31	1.56
295412--295451	21	2.0	20	85	5	53	22	5	5	67	1.30
297849--297901	20	2.7	20	100	0	106	33	26	13	26	1.93
311549--311582	17	2.0	17	94	0	59	14	29	20	35	1.93
322228--322297	12	5.8	12	76	6	70	52	18	14	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322226--322317	48	1.9	48	90	0	148	50	17	14	18	1.79
322226--322320	24	4.0	24	81	0	109	49	17	13	18	1.79
322226--322332	48	2.2	48	86	3	144	48	17	14	18	1.81
322226--322334	24	4.5	25	76	6	100	48	17	15	18	1.81
323865--323964	31	3.2	31	63	31	77	27	27	10	36	1.88
323870--323992	63	2.0	63	100	0	246	27	28	9	34	1.89
324907--324946	7	5.4	7	85	11	53	25	25	35	15	1.94
324912--324946	15	2.3	15	100	0	70	28	25	34	11	1.91
324915--324949	8	4.5	8	92	7	63	22	25	37	14	1.92
324930--325020	18	5.2	18	78	16	93	15	18	48	17	1.82
324936--325016	31	2.6	31	90	0	135	14	19	48	17	1.82
324936--324998	13	4.5	13	78	18	63	15	19	47	17	1.83
325995--326069	23	3.1	23	74	12	71	29	0	6	64	1.19
328247--328287	21	1.9	22	85	14	59	65	0	2	31	1.05
328248--328337	25	3.5	25	71	14	83	63	2	3	31	1.23
328818--328861	20	2.2	20	83	0	52	47	0	2	50	1.13
332703--332732	15	2.0	15	93	0	51	23	13	10	53	1.69
332979--333069	40	2.3	40	92	0	146	34	13	15	37	1.86
348385--348411	14	1.9	14	100	0	54	14	7	33	44	1.73
349582--349638	28	2.0	29	83	6	73	42	0	0	57	0.98
352144--352268	55	2.2	56	82	2	162	30	24	27	18	1.98
369186--369228	19	2.3	18	88	4	59	11	4	4	79	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372295--372325	14	2.2	14	94	0	53	51	3	0	45	1.17
372339--372404	30	2.2	30	83	5	80	51	1	4	42	1.31
372380--372436	24	2.4	24	76	5	62	56	3	0	40	1.17
372436--372497	32	1.9	32	93	0	106	29	16	6	48	1.70
374669--374728	20	3.4	17	74	21	52	43	0	3	53	1.17
374666--374705	20	2.0	21	95	5	73	42	0	5	52	1.23
374739--374793	13	4.3	13	84	8	53	38	0	0	61	0.96
374784--374817	10	3.4	10	92	8	52	23	8	0	67	1.18
376717--376792	31	2.5	31	77	10	84	42	5	6	46	1.52
376717--376790	30	2.4	30	78	10	78	43	5	6	44	1.53
384089--384245	84	1.9	84	91	2	262	20	23	33	22	1.97
388755--388794	21	1.9	21	85	10	55	35	10	2	52	1.48
390268--390312	19	2.4	19	96	0	81	40	31	13	15	1.86
390720--390885	77	2.2	76	90	4	262	22	25	31	21	1.98
391963--392265	46	6.6	46	90	1	457	43	13	21	21	1.86
391980--392265	137	2.1	137	91	1	385	43	13	20	21	1.87
394879--394908	15	2.0	15	93	0	51	40	3	20	36	1.69
396425--396473	21	2.4	20	80	6	62	26	18	24	30	1.98
396870--396901	2	16.0	2	100	0	64	50	0	0	50	1.00
397291--397342	20	2.6	20	82	11	70	28	28	17	25	1.97
398846--398874	14	2.0	15	93	6	51	34	20	3	41	1.69

Tables:   1   2

The End!