genome.fa.s8074.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008074.1 Hibiscus syriacus cultivar Beakdansim tig00110576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348028

Tables:   1   2   

This is table  2  of  2  ( 223 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122912--123256	142	2.5	137	90	5	516	14	20	18	46	1.84
122950--123228	52	5.2	52	93	4	388	14	21	17	46	1.83
125727--125773	24	2.0	24	87	8	69	38	21	14	25	1.92
126456--126824	20	18.5	20	86	4	458	20	18	26	34	1.96
130193--130350	21	7.8	20	72	7	86	39	24	17	18	1.92
130317--130546	20	11.5	20	80	5	223	36	24	18	20	1.94
133756--134010	19	14.7	19	74	19	245	46	18	22	13	1.83
133756--133953	33	5.8	33	82	13	201	46	18	21	13	1.83
133784--134010	52	4.3	52	97	0	418	46	16	23	13	1.83
133842--134004	33	4.8	33	74	18	154	47	17	22	12	1.81
134019--134059	20	2.1	20	90	4	66	17	21	12	48	1.79
134019--134097	19	4.4	19	73	16	87	16	22	15	45	1.84
134204--134240	14	2.6	14	91	0	65	45	21	0	32	1.52
136163--136278	19	6.6	19	75	19	99	45	22	20	11	1.82
136200--136256	14	3.7	14	77	20	60	45	22	22	8	1.80
136181--136273	33	2.8	33	91	0	159	47	21	21	9	1.79
136274--136383	19	6.3	18	70	22	83	9	16	28	46	1.77
136274--136365	33	2.8	33	93	3	150	7	17	28	46	1.75
136431--137085	93	7.1	93	99	0	1285	46	19	12	21	1.83
138791--138880	14	5.7	14	68	23	54	45	22	22	10	1.81
138783--138897	33	3.5	33	92	0	194	47	20	21	10	1.79
138805--138902	19	5.7	19	68	22	72	44	21	22	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138921--139016	21	4.8	20	78	6	104	14	23	16	44	1.85
139096--139166	33	2.2	33	89	0	106	49	18	21	11	1.78
139348--139402	22	2.5	22	81	0	74	20	16	40	23	1.91
139549--139742	20	9.6	20	81	5	212	19	19	25	35	1.95
139549--139742	60	3.2	60	81	3	237	19	19	25	35	1.95
140123--140226	42	2.4	44	80	4	124	25	23	14	37	1.92
142456--142533	5	15.8	5	76	7	61	69	0	0	30	0.89
142503--142532	14	2.1	14	100	0	60	80	0	0	20	0.72
143967--144043	30	2.6	30	76	0	91	27	19	14	38	1.90
144401--144476	21	3.2	24	83	10	86	42	1	18	38	1.59
144435--144485	10	4.8	10	77	13	57	35	0	15	49	1.45
144416--144485	21	3.1	22	83	8	88	40	0	17	42	1.49
145141--145188	21	2.4	21	79	6	55	45	10	18	25	1.81
145736--145780	17	2.5	19	75	17	51	35	13	0	51	1.41
146033--146093	22	2.8	22	85	5	79	26	26	19	27	1.99
146561--146600	2	20.0	2	100	0	80	50	0	0	50	1.00
148054--148111	2	29.0	2	100	0	116	50	0	0	50	1.00
151718--151777	21	3.2	21	65	30	62	30	5	21	43	1.74
151709--151828	35	3.3	36	89	6	181	30	5	20	43	1.73
156212--156307	21	5.2	20	64	31	63	31	5	19	43	1.73
156211--156355	35	4.1	35	91	3	229	31	4	19	44	1.72
158504--158570	32	2.1	33	91	2	109	8	38	23	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158574--158611	20	1.9	20	94	0	67	13	28	34	23	1.92
172484--172658	91	1.9	91	89	0	269	34	13	16	35	1.87
175743--175775	16	2.1	16	88	5	50	48	0	6	45	1.27
175862--175908	23	1.9	25	83	12	62	59	0	0	40	0.97
177333--177373	3	14.0	3	80	14	50	63	0	0	36	0.95
177503--178214	76	9.4	76	96	0	1261	35	21	19	22	1.96
177503--178214	227	3.1	226	95	0	1273	35	21	19	22	1.96
179089--179133	23	1.9	23	82	13	56	15	26	6	51	1.68
178619--179289	113	6.0	112	89	4	912	29	18	13	37	1.90
179690--179744	22	2.5	22	90	0	92	38	14	12	34	1.84
180130--180277	54	2.7	54	96	0	278	21	22	15	40	1.91
182384--182639	83	3.1	83	96	0	467	35	20	14	28	1.93
190023--190055	16	2.1	16	88	5	50	48	0	6	45	1.27
190141--190187	23	1.9	25	83	12	62	59	0	0	40	0.97
191247--191272	13	2.0	13	100	0	52	23	30	7	38	1.83
194572--194635	22	2.9	22	80	11	60	46	1	1	50	1.20
194557--194667	53	2.1	53	80	9	120	50	1	0	46	1.18
194589--194635	22	2.1	23	88	4	69	44	2	0	53	1.12
194752--194820	19	3.6	18	71	21	52	49	1	1	47	1.19
194715--194800	27	3.1	27	71	18	70	47	1	2	48	1.22
194815--194859	23	2.0	23	86	0	63	53	2	2	42	1.25
195475--195505	14	2.1	15	94	5	55	67	0	19	12	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195467--195512	23	2.0	24	83	12	60	67	0	19	13	1.23
211498--211569	2	36.0	2	100	0	144	50	0	0	50	1.00
215273--215327	2	27.5	2	100	0	110	50	0	0	49	1.00
216730--216808	39	2.0	39	92	0	131	36	11	27	24	1.90
272239--272296	26	2.2	26	100	0	116	37	3	20	37	1.70
272649--272684	8	4.4	8	93	6	63	52	0	0	47	1.00
286363--286393	2	15.5	2	100	0	62	51	0	0	48	1.00
287123--287170	6	8.0	6	95	0	87	18	33	14	33	1.91
298830--298871	17	2.3	19	80	12	52	38	7	2	52	1.42
300259--300324	31	2.1	31	83	5	80	27	7	3	62	1.37
306224--306256	2	16.5	2	100	0	66	51	0	0	48	1.00
306287--306329	15	2.8	16	86	10	54	16	11	2	69	1.28
306287--306346	23	2.7	22	82	7	59	16	8	3	71	1.24
306287--306329	8	5.7	7	84	13	50	16	11	2	69	1.28
308215--308277	24	2.6	24	94	0	108	23	31	9	34	1.87
309301--309457	64	2.5	62	78	7	152	33	18	23	24	1.97
309465--309502	20	1.9	20	88	0	58	34	18	21	26	1.96
310923--310982	23	2.6	23	86	0	84	18	25	26	30	1.98
315518--316512	331	3.0	332	97	1	1879	38	11	8	42	1.70
316568--316630	23	2.7	23	87	0	90	39	19	4	36	1.72
317036--317121	39	2.2	39	95	0	154	17	13	19	48	1.80
317380--317416	18	2.1	18	89	0	56	51	10	5	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318044--318116	23	3.2	23	82	0	83	41	19	5	34	1.74
318462--318527	25	2.6	25	80	0	87	42	13	9	34	1.76
320994--321673	362	1.9	362	96	0	1261	32	16	15	35	1.90
320994--321673	183	3.7	183	96	1	1233	32	16	15	35	1.90
323610--323652	20	2.3	18	85	14	61	20	16	11	51	1.75
323615--323661	20	2.4	19	82	10	67	19	17	10	53	1.72
323783--323828	20	2.3	20	89	10	76	17	17	10	54	1.70
324907--324944	19	2.0	19	94	0	67	31	10	7	50	1.66
326109--326191	29	2.8	29	92	1	139	43	9	14	32	1.78
330864--330946	29	2.8	29	92	1	139	43	9	14	32	1.78
331729--331793	32	2.0	32	88	5	96	32	3	21	43	1.68
334401--334427	7	3.9	7	100	0	54	14	55	0	29	1.40
336939--336969	12	2.7	12	95	5	55	64	6	0	29	1.18
340450--340474	2	12.5	2	100	0	50	52	0	0	48	1.00
346300--346560	132	2.0	128	94	3	459	27	11	16	44	1.82

Tables:   1   2

The End!