genome.fa.s8074.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008074.1 Hibiscus syriacus cultivar Beakdansim tig00110576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348028

Tables:   1   2   

This is table  1  of  2  ( 223 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1239--1610	92	4.1	92	95	3	650	22	13	18	45	1.83
1653--1780	19	7.3	19	74	18	116	45	28	17	8	1.78
1689--1780	33	2.8	32	90	6	141	45	28	18	7	1.76
1776--1909	19	7.6	19	78	15	128	10	19	24	45	1.81
1798--1853	14	3.7	14	80	17	67	8	21	25	44	1.81
1781--1872	32	2.8	33	95	3	168	9	20	22	46	1.80
3705--3777	38	1.9	38	97	0	137	28	1	16	53	1.51
3701--3764	19	3.4	19	64	10	51	25	1	15	57	1.47
3759--3794	14	2.6	14	95	0	63	33	0	22	44	1.53
3901--4001	19	5.6	19	82	15	142	43	17	23	14	1.87
4030--4423	19	22.4	19	81	15	485	14	21	17	46	1.83
4008--4423	51	7.9	49	82	10	334	14	21	17	46	1.83
4030--4423	71	5.6	71	84	11	500	14	21	17	46	1.83
6719--6743	12	2.1	12	100	0	50	0	28	0	72	0.86
6918--6964	24	2.0	24	87	8	69	38	21	14	25	1.92
7638--8046	20	20.5	20	85	5	486	20	18	25	35	1.95
8497--8555	30	2.0	29	96	3	109	33	28	10	27	1.89
10418--10569	68	2.2	69	94	1	261	35	7	18	38	1.80
14088--14129	23	1.9	21	85	9	57	26	2	2	69	1.13
14348--14398	26	2.0	26	92	0	84	35	3	9	50	1.54
18246--18311	29	2.3	29	84	5	80	16	12	19	51	1.75
24734--24792	26	2.3	26	100	0	118	13	28	13	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24954--25008	23	2.5	22	82	11	67	50	1	1	45	1.22
25857--25907	11	4.6	11	97	0	93	47	0	9	43	1.36
26785--26860	30	2.4	31	85	10	93	57	6	11	23	1.57
28551--28585	3	12.0	3	87	6	54	65	0	0	34	0.93
28800--29225	134	3.2	133	84	0	564	23	18	31	26	1.97
29243--29303	31	2.0	30	84	9	79	45	14	13	26	1.81
29280--29472	64	3.0	64	81	5	235	38	15	20	24	1.92
29624--29772	66	2.3	67	92	4	250	38	12	15	33	1.84
29996--30208	94	2.3	94	94	0	372	36	11	19	32	1.88
30293--30455	35	4.7	35	77	11	138	38	12	19	30	1.88
30298--30455	69	2.3	71	81	6	171	36	12	19	31	1.89
30294--30487	35	5.5	33	71	11	102	37	11	19	31	1.88
30515--30597	36	2.2	39	78	6	91	44	10	15	28	1.80
32226--32275	18	2.9	18	74	20	52	2	16	8	74	1.15
36182--36280	30	3.2	30	81	2	90	60	9	10	20	1.55
37986--38023	3	13.0	3	83	5	51	68	0	0	31	0.90
39675--39732	22	2.6	22	83	5	73	34	1	3	60	1.24
39673--39716	22	2.0	22	95	0	79	29	0	4	65	1.12
39722--39746	2	12.5	2	100	0	50	48	0	0	52	1.00
43798--43859	19	3.3	19	78	15	58	37	1	0	61	1.06
44320--44379	31	1.9	31	89	0	93	45	10	5	40	1.60
46621--46657	19	1.9	19	94	0	65	0	21	5	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47131--47171	3	13.7	3	94	0	73	63	0	0	36	0.95
47491--48049	113	4.9	113	94	1	913	29	19	13	37	1.90
48780--49344	84	6.7	84	98	0	1078	37	21	13	27	1.91
50111--50152	19	2.2	20	91	4	68	52	11	4	30	1.59
62760--62808	19	2.4	21	80	13	66	0	22	8	69	1.14
63277--63341	3	21.7	3	93	0	112	63	0	0	36	0.95
63637--63665	3	9.7	3	100	0	58	31	0	0	68	0.89
64549--64597	25	2.0	25	100	0	98	16	16	22	44	1.86
66801--66848	23	2.1	23	84	0	60	35	10	18	35	1.85
66925--66969	22	2.0	22	83	8	56	40	13	8	37	1.76
67278--67336	23	2.6	23	88	0	82	40	16	5	37	1.71
67740--67826	39	2.2	39	95	0	156	17	13	20	48	1.81
68086--68122	18	2.1	18	89	0	56	51	10	5	32	1.60
68510--68560	25	2.0	25	92	0	84	39	19	7	33	1.81
68839--68901	23	2.7	23	92	0	99	38	20	4	36	1.74
69329--69391	23	2.7	23	87	0	90	38	17	4	39	1.71
69409--69456	22	2.2	22	78	14	55	39	10	14	35	1.80
68663--69738	490	2.2	490	98	0	2098	41	12	7	39	1.71
69737--69802	25	2.6	25	80	0	87	42	13	9	34	1.76
72765--72829	23	2.8	23	92	0	103	38	20	6	35	1.77
74422--74501	9	8.6	9	72	8	61	22	33	6	37	1.79
74425--74513	12	7.4	12	87	0	97	21	33	7	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74421--74501	6	13.5	6	82	0	81	23	33	6	37	1.80
74437--74513	36	2.1	36	92	0	127	20	33	9	36	1.85
74425--74516	6	15.3	6	81	0	76	20	33	7	38	1.81
75985--77335	199	6.8	199	96	1	2493	31	17	15	36	1.91
75985--77335	394	3.4	398	96	1	2502	31	17	15	36	1.91
75985--77335	594	2.3	594	97	0	2521	31	17	15	36	1.91
77450--77498	19	2.6	19	93	0	80	57	10	2	30	1.43
79285--79349	33	2.0	33	87	3	96	21	47	0	30	1.51
79381--79424	21	2.1	21	91	0	70	15	31	11	40	1.83
81787--81833	20	2.3	20	89	10	78	17	17	10	55	1.69
81882--82603	228	3.1	229	96	1	1340	39	8	7	44	1.64
83439--83527	34	2.7	31	79	6	88	39	0	2	58	1.11
83672--83737	28	2.4	28	84	2	80	34	0	3	62	1.11
83667--83705	17	2.3	17	81	0	51	35	0	2	61	1.10
87412--88075	225	2.9	228	96	1	1201	44	7	8	39	1.63
88500--88563	23	2.8	23	90	0	101	35	4	21	37	1.75
88984--89047	23	2.8	23	90	0	101	35	4	21	37	1.75
89465--89525	20	2.8	23	80	12	74	34	4	22	37	1.76
89936--89999	23	2.8	23	87	0	92	35	6	21	35	1.79
88092--90404	953	2.4	965	96	1	4256	40	7	11	40	1.69
88092--90404	484	4.8	482	95	1	4245	40	7	11	40	1.69
93708--93747	2	21.0	2	90	10	66	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98475--98523	23	2.1	23	82	14	57	18	10	6	65	1.43
107385--107460	33	2.5	32	79	12	88	40	0	1	57	1.07
109186--109233	21	2.3	21	85	0	60	25	39	12	22	1.89
109237--109309	21	3.5	21	88	7	112	17	34	27	20	1.95
109830--109936	34	3.1	34	89	0	160	55	4	3	36	1.39
110329--111319	128	7.7	128	95	0	1748	34	20	23	20	1.96
111400--111437	8	4.9	8	80	6	51	39	26	0	34	1.57
115813--115887	37	2.0	37	80	14	84	48	2	1	48	1.24
116761--116791	16	1.9	16	100	0	62	61	0	6	32	1.21
117164--117215	20	2.6	20	96	0	95	38	26	13	21	1.90
117206--117303	21	4.8	20	71	6	70	35	21	20	22	1.96
117271--117464	20	9.6	20	76	8	76	35	25	19	19	1.95
117267--117464	40	5.0	39	81	4	200	35	26	19	19	1.95
117271--117463	60	3.2	60	83	0	251	35	25	19	19	1.95
117609--117662	21	2.5	21	75	3	54	24	37	16	22	1.94
117841--117909	32	2.2	32	91	0	111	11	21	20	46	1.82
117841--117890	18	3.0	18	69	22	54	12	22	22	44	1.85
118032--118086	14	3.6	14	73	21	56	41	23	25	9	1.83
118032--118102	33	2.2	33	94	0	124	43	25	22	8	1.81
118098--118195	19	5.7	19	70	22	81	10	24	22	42	1.84
118120--118209	14	5.7	14	74	23	81	8	25	23	42	1.83
118103--118217	33	3.5	33	95	0	212	9	24	20	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119910--120473	93	6.1	93	98	0	1089	21	12	18	46	1.82
120517--120631	19	6.3	19	82	10	141	46	28	16	8	1.77
120627--120761	19	7.6	19	74	16	119	11	18	23	45	1.82
120649--120705	14	3.7	14	77	20	60	10	21	22	45	1.82
120632--120724	33	2.8	33	93	0	159	11	19	21	47	1.81
122578--122613	12	3.0	12	83	0	54	19	0	16	63	1.30
122678--122713	13	2.6	14	82	8	56	33	0	22	44	1.53
122820--122921	19	5.6	19	84	13	151	44	17	23	14	1.86
122950--123256	19	17.4	19	80	16	376	14	20	18	46	1.83
122950--123189	71	3.4	71	86	11	373	14	20	17	47	1.83

Tables:   1   2