genome.fa.s8086.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008086.1 Hibiscus syriacus cultivar Beakdansim tig00110596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  756749

Tables:   1   2   3   

This is table  2  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316835--316985	61	2.5	61	98	0	293	29	21	25	24	1.99
316957--317022	21	3.2	21	67	4	62	33	22	19	24	1.97
316965--317030	21	3.2	21	67	4	62	37	24	18	19	1.93
318285--318339	2	27.5	2	100	0	110	49	0	0	50	1.00
319992--320018	3	9.0	3	100	0	54	0	33	0	66	0.92
320985--321036	25	2.1	25	100	0	104	46	11	17	25	1.81
328329--328361	2	16.5	2	100	0	66	51	0	0	48	1.00
336095--336119	2	12.5	2	100	0	50	52	0	0	48	1.00
338233--338273	21	2.0	21	100	0	82	24	7	14	53	1.66
339000--339058	27	2.2	26	84	6	73	27	1	3	67	1.16
339060--339115	24	2.3	23	77	14	60	37	1	3	57	1.27
342444--342483	18	2.2	18	90	0	62	65	0	2	32	1.06
347833--347870	20	1.9	20	88	0	58	26	26	5	42	1.76
350627--350682	15	3.6	15	80	7	67	57	16	0	26	1.39
352368--352491	64	1.9	64	93	0	212	23	9	4	62	1.42
365865--365900	18	1.9	19	88	5	56	80	0	5	13	0.88
365864--365910	13	3.5	13	77	11	51	76	0	8	14	1.01
366052--366092	9	4.3	10	81	12	50	34	0	2	63	1.08
384977--385016	15	2.6	16	84	4	55	17	5	22	55	1.61
427696--427742	2	24.0	2	95	4	87	51	0	0	48	1.00
428967--429123	43	3.7	44	78	14	152	29	20	22	27	1.99
429546--429641	42	2.3	42	78	7	106	1	39	19	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429546--429638	21	4.4	21	86	0	96	1	40	19	38	1.59
437772--438014	83	2.9	83	81	1	281	26	20	18	34	1.96
437841--437968	42	3.1	42	69	10	100	27	17	20	34	1.95
437777--438054	41	6.7	41	72	9	161	26	20	18	34	1.96
439384--439432	25	2.0	25	91	0	80	28	8	24	38	1.84
444145--444189	23	2.0	23	86	0	63	26	28	24	20	1.99
444168--444471	149	2.0	149	98	0	590	35	20	16	27	1.94
445006--445045	2	20.0	2	100	0	80	50	0	0	50	1.00
445374--445408	18	1.9	18	88	11	54	22	17	5	54	1.64
445948--446054	46	2.3	46	96	0	196	18	18	26	36	1.94
448387--448420	16	2.1	16	94	0	59	32	26	8	32	1.87
454665--454695	2	15.5	2	100	0	62	48	0	0	51	1.00
456134--456582	229	2.0	227	94	1	783	45	8	7	39	1.61
456648--456693	20	2.3	19	89	10	74	54	10	17	17	1.70
456814--456860	20	2.4	19	86	10	67	55	8	17	19	1.67
459089--459153	21	3.1	21	80	6	69	40	15	29	15	1.88
459186--459251	33	2.0	33	90	0	105	28	0	48	22	1.51
461035--461082	19	2.6	19	93	3	80	31	2	10	56	1.45
461200--462345	193	5.9	198	94	4	2018	36	16	15	30	1.91
463797--463868	3	24.0	3	78	0	72	34	5	34	25	1.79
465045--465725	178	3.8	182	93	4	1132	36	14	16	32	1.89
465719--465764	22	2.0	23	91	4	76	30	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468835--468887	19	2.7	20	85	8	72	33	7	22	35	1.83
468835--468900	19	3.3	19	85	6	69	33	6	22	37	1.79
469263--469311	23	2.1	23	88	7	73	34	2	20	42	1.64
468738--469546	416	1.9	413	93	5	1393	39	8	13	39	1.74
469576--469626	25	2.0	25	92	0	84	33	7	19	39	1.81
469871--469907	18	2.1	18	89	0	56	32	5	10	51	1.60
469863--469909	24	2.0	24	86	0	67	34	4	14	46	1.64
470160--470282	37	3.2	38	90	6	196	47	20	13	17	1.81
470164--470279	38	3.1	38	91	6	191	48	19	14	17	1.81
470673--470736	23	2.8	23	87	0	92	35	6	20	37	1.78
470673--470745	23	3.2	23	82	7	85	34	5	20	39	1.76
472024--472097	23	3.2	23	84	0	94	21	14	21	41	1.89
474206--474254	23	2.1	24	84	3	64	55	8	2	34	1.41
474945--475102	21	7.8	20	70	7	77	37	24	17	19	1.93
475070--475274	20	10.5	20	80	10	201	34	24	20	20	1.96
475089--475235	35	3.9	35	77	12	118	33	25	20	20	1.97
475129--475274	75	1.9	74	83	8	188	32	23	20	22	1.98
475204--475301	20	4.9	20	87	7	110	38	23	15	22	1.92
475109--475294	95	2.0	94	84	8	243	34	24	19	22	1.96
476001--476047	24	2.0	24	87	8	69	25	14	21	38	1.92
476221--476245	12	2.1	12	100	0	50	72	0	28	0	0.86
478547--478582	19	1.9	19	94	5	65	58	5	13	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479582--479619	2	19.0	2	100	0	76	50	0	0	50	1.00
479855--479887	13	2.5	14	90	9	52	51	0	0	48	1.00
481444--481479	18	2.0	18	100	0	72	38	11	0	50	1.38
483491--483522	16	2.0	16	100	0	64	56	25	12	6	1.59
483595--483663	16	4.3	16	90	0	111	60	21	7	10	1.52
485173--485234	24	2.6	24	86	0	88	53	22	11	12	1.71
488645--488787	60	2.4	60	97	0	268	13	3	46	35	1.61
488773--488959	48	3.9	48	81	4	225	20	3	41	34	1.71
488872--488981	27	4.3	26	72	15	86	20	3	42	33	1.69
488882--488930	21	2.3	22	82	10	66	22	2	42	32	1.65
488770--488954	96	1.9	96	86	2	264	20	3	42	34	1.68
488866--489029	75	2.2	75	91	0	256	18	3	43	33	1.68
488941--489325	48	8.0	48	83	2	470	18	6	43	30	1.75
488767--489125	171	2.1	171	86	1	495	19	5	42	32	1.74
488899--489317	144	2.9	140	76	11	391	19	5	43	31	1.75
489112--489192	21	3.6	21	71	18	63	17	6	46	29	1.72
489181--489315	27	5.5	26	65	20	65	19	3	45	31	1.67
488944--489325	96	4.0	96	91	0	593	19	6	43	30	1.75
505175--505267	21	4.6	20	78	4	96	38	18	24	18	1.92
505172--505267	41	2.3	41	98	0	183	39	17	23	18	1.92
505175--505267	20	4.6	20	78	4	96	38	18	24	18	1.92
505194--505328	41	3.3	41	81	6	123	37	20	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505256--505349	20	4.7	20	80	2	89	34	24	18	23	1.96
505895--505938	19	2.3	19	92	7	72	50	25	15	9	1.74
505934--506118	19	10.1	19	77	14	165	12	22	21	43	1.86
505934--506023	39	2.3	38	92	1	144	13	20	21	45	1.84
506006--506093	33	2.6	33	92	1	140	11	25	25	38	1.89
506061--506118	20	2.9	20	80	10	64	13	24	18	43	1.87
508120--508242	42	2.9	42	78	2	113	22	35	17	23	1.95
508176--508242	21	3.2	21	66	6	55	23	35	20	19	1.95
509598--509633	14	2.6	14	95	0	63	30	0	25	44	1.54
509812--509931	19	6.7	19	65	21	71	10	23	20	45	1.83
509816--509910	33	2.9	33	96	0	172	12	23	18	45	1.84
512204--512228	12	2.1	12	100	0	50	0	28	0	72	0.86
513707--513743	14	2.6	14	86	0	56	48	21	0	29	1.50
514296--514332	14	2.6	14	86	0	56	48	21	0	29	1.50
513330--515169	589	3.1	590	98	0	3587	36	19	11	32	1.88
514884--514920	14	2.6	14	86	0	56	48	21	0	29	1.50
516788--516854	19	3.5	19	83	4	89	37	23	23	14	1.93
516843--516900	14	3.9	14	79	16	71	48	25	17	8	1.75
516827--516905	32	2.4	33	95	2	142	46	24	18	10	1.80
516912--516993	18	4.6	19	80	14	95	12	20	21	45	1.84
516912--517023	33	3.1	35	75	19	97	13	22	22	41	1.88
516978--517031	20	2.8	19	86	5	72	16	24	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516912--517031	19	6.6	19	75	16	92	13	21	23	41	1.88
517503--517547	18	2.5	18	85	0	63	15	15	42	26	1.87
518867--518920	20	2.8	20	80	2	65	48	22	16	12	1.80
519154--519197	22	2.0	22	95	0	79	18	15	45	20	1.85
519385--519478	20	4.7	20	80	2	89	23	18	24	34	1.96
519405--519540	41	3.3	42	78	5	118	20	20	20	38	1.94
519365--519479	20	5.7	20	78	5	88	23	17	23	35	1.95
519468--519560	21	4.6	20	79	4	105	18	23	18	39	1.92
519468--519563	41	2.3	41	96	0	174	18	22	17	40	1.91
520516--520556	22	2.0	21	85	9	57	41	19	2	36	1.65

Tables:   1   2   3