genome.fa.s8089.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008089.1 Hibiscus syriacus cultivar Beakdansim tig00110599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  419803

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355973--356181	103	2.0	104	93	0	357	39	11	19	30	1.87
356084--356158	39	1.9	39	86	5	107	38	13	21	26	1.90
356265--356412	72	2.0	75	85	7	205	39	14	18	27	1.89
357563--358097	183	2.9	183	94	1	932	30	21	20	27	1.98
362384--362427	18	2.4	18	84	3	52	77	2	2	18	0.98
362408--362440	16	2.0	17	88	5	50	63	0	3	33	1.10
362682--362724	18	2.5	17	85	7	61	67	2	4	25	1.22
363080--363184	37	2.8	37	85	0	129	31	12	13	42	1.81
364564--364605	21	2.0	21	95	0	75	30	14	7	47	1.71
364600--364703	33	3.2	33	90	1	165	31	8	16	43	1.78
364743--364776	15	2.3	15	94	0	59	17	8	11	61	1.54
365254--365416	87	1.9	87	94	2	292	41	10	14	33	1.80
366239--366277	20	2.0	19	90	5	60	33	10	2	53	1.48
375811--375874	21	3.0	21	79	4	65	14	25	35	25	1.93
379681--379720	21	1.9	21	85	10	55	35	10	2	52	1.48
382741--382772	16	1.9	17	93	6	57	37	6	21	34	1.79
383526--383555	16	1.9	16	93	6	53	46	20	23	10	1.80
388578--388624	20	2.4	21	79	13	55	53	10	0	36	1.36
388802--389185	160	2.4	159	86	5	515	48	6	17	28	1.71
389823--389865	19	2.3	19	92	4	70	46	4	4	44	1.45
408106--408159	21	2.6	21	100	0	108	20	16	33	29	1.95
408254--408304	20	2.5	20	93	0	84	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408863--409025	20	8.9	19	72	18	132	11	21	22	44	1.84
408864--408941	39	2.0	39	87	5	113	8	19	26	44	1.80
408913--409000	33	2.6	33	90	1	131	11	23	25	39	1.88
411076--411142	21	3.2	21	66	6	55	23	35	20	19	1.95
411020--411142	42	2.9	42	80	4	115	23	36	17	22	1.94
412491--412528	14	2.8	13	88	7	58	31	0	21	47	1.51
412481--412537	13	4.4	13	77	14	55	28	0	19	52	1.46
412635--412692	18	3.1	18	85	9	80	46	18	18	15	1.84
412635--412686	20	2.7	19	91	5	79	46	21	21	11	1.82
412636--412727	19	4.8	19	77	4	51	35	19	19	25	1.95
412689--412787	33	3.0	33	91	2	155	17	21	20	41	1.90
412692--412787	19	5.6	19	66	22	77	14	21	20	42	1.88
416356--416453	20	4.9	20	98	0	187	36	24	23	15	1.93
416603--416639	14	2.6	14	86	0	56	48	21	0	29	1.50
418493--418558	20	3.5	19	79	6	80	36	22	24	16	1.94
418493--418558	19	3.5	20	78	14	68	36	22	24	16	1.94
418587--418644	14	3.9	14	79	16	71	10	17	24	48	1.78
418570--418660	32	2.8	33	94	3	166	12	18	21	47	1.81
418645--418699	20	2.8	19	83	8	65	16	23	23	36	1.94
419174--419217	17	2.5	18	85	3	63	13	15	43	27	1.85

Tables:   1   2

The End!