Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000809.1 Hibiscus syriacus cultivar Beakdansim tig00001569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73923

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1070--1274
64
3.2
61
80
8
180
29
17
21
31
1.96
7904--7944
20
2.0
20
85
0
55
24
12
14
48
1.78
8119--8388
147
1.8
150
86
3
402
32
17
9
41
1.81
9169--9256
2
44.5
2
97
2
169
51
0
0
48
1.00
14378--14443
27
2.4
27
100
0
132
27
19
16
36
1.93
15467--15508
20
2.2
19
91
4
66
30
11
16
40
1.85
16269--16308
20
1.9
22
85
10
57
17
5
15
62
1.49
18121--18185
30
2.2
30
97
0
121
30
26
15
27
1.96
20145--20197
20
2.7
20
96
0
97
49
18
18
13
1.80
20966--20999
16
2.1
16
94
0
59
2
26
0
70
1.01
21190--21233
19
2.3
19
92
0
70
25
18
22
34
1.96
25801--25829
2
14.5
2
100
0
58
51
0
0
48
1.00
25849--26011
85
1.9
85
83
0
209
30
17
19
32
1.95
25993--26041
13
3.7
13
78
5
62
36
16
18
28
1.92
28438--28558
32
3.8
31
74
8
102
48
9
3
38
1.53
33715--33754
17
2.4
17
86
0
53
67
0
0
32
0.91
35029--35079
2
25.5
2
91
0
84
47
0
52
0
1.00
36807--36866
29
2.1
29
93
0
102
16
25
40
18
1.91
36853--36974
60
2.0
60
98
0
235
13
21
41
22
1.88
36976--37001
13
2.0
13
100
0
52
30
23
38
7
1.83
37364--37401
9
4.2
9
83
10
51
31
0
2
65
1.06
37663--37717
18
3.4
18
65
31
52
38
0
9
52
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37745--37784
21
1.9
21
100
0
80
27
0
15
57
1.38
37963--38057
29
3.2
30
78
15
90
40
2
10
47
1.50
38031--38079
22
2.2
22
96
0
89
44
2
14
38
1.56
40397--40444
14
3.6
14
81
16
66
47
16
0
35
1.47
40416--40527
48
2.3
49
92
3
181
48
10
0
41
1.38
40465--40590
60
2.1
60
95
1
227
46
12
0
41
1.42
40524--40794
49
5.3
49
88
8
380
46
12
0
40
1.41
40413--40797
109
3.7
103
88
7
548
47
12
0
40
1.41
40672--40798
60
2.1
60
95
1
229
45
13
0
40
1.43
40416--40797
207
1.8
207
94
1
676
47
12
0
40
1.41
42476--42948
236
2.0
236
97
0
892
21
23
19
35
1.96
44100--44153
28
1.9
28
96
0
99
57
12
0
29
1.36
44096--44160
28
2.3
28
84
10
96
55
10
0
33
1.35
44130--44178
21
2.3
21
85
3
71
53
16
0
30
1.43
44588--44622
13
2.7
13
86
0
52
28
20
34
17
1.95
44862--44935
29
2.6
29
84
4
87
18
28
32
20
1.96
44882--44964
29
2.9
28
85
10
105
14
33
31
20
1.93
45565--45608
22
2.0
22
86
8
63
38
0
4
56
1.20
45761--45811
3
16.7
3
84
11
68
33
3
0
62
1.13
50533--50571
20
2.0
20
85
14
55
43
10
2
43
1.52
51034--51073
21
1.9
21
100
0
80
30
25
22
22
1.99
63741--63787
16
2.9
16
93
0
76
14
10
10
63
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63911--63949
20
1.9
21
89
5
62
23
2
5
69
1.21
65564--65602
19
2.1
19
100
0
78
41
5
20
33
1.74
71969--71998
14
2.1
14
93
0
51
13
23
0
63
1.29

Tables:   1

The End!