genome.fa.s8090.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008090.1 Hibiscus syriacus cultivar Beakdansim tig00110600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  750292

Tables:   1   2   3   

This is table  3  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558190--558389	101	2.0	101	96	0	373	43	14	9	33	1.77
559741--559811	35	2.0	36	86	5	101	49	2	0	47	1.16
566994--567029	3	12.0	3	87	0	54	27	0	0	72	0.85
566994--567036	9	4.8	9	88	0	59	27	0	0	72	0.85
567255--567298	23	1.9	23	86	9	63	47	2	6	43	1.42
567253--567307	23	2.3	25	75	18	62	45	1	5	47	1.36
568032--568068	7	5.3	7	86	0	56	45	0	0	54	1.00
570900--570943	20	2.2	20	91	0	70	68	0	6	25	1.14
573001--573069	30	2.2	30	85	15	95	34	5	17	42	1.73
573010--573069	30	2.0	30	93	6	104	33	6	16	43	1.74
573159--573200	20	2.1	20	100	0	84	23	38	28	9	1.86
573315--573357	21	2.0	21	95	0	77	23	20	27	27	1.99
573385--573424	20	1.9	22	90	10	66	37	40	10	12	1.77
573639--573708	34	2.1	32	89	5	104	31	15	31	21	1.95
574053--574142	43	2.1	43	85	2	128	30	6	15	47	1.71
574033--574502	254	1.9	254	83	4	558	28	11	12	48	1.74
574717--574762	19	2.4	19	89	7	67	47	0	0	52	1.00
575074--575136	30	2.1	30	90	0	99	38	11	9	41	1.73
577900--577924	2	12.5	2	100	0	50	48	0	0	52	1.00
579937--580013	24	3.2	24	79	0	82	59	15	14	10	1.60
581173--581203	14	2.2	14	100	0	62	58	0	6	35	1.24
585732--585788	19	3.0	19	79	5	62	50	15	17	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588098--588157	31	2.0	30	86	3	84	31	1	8	58	1.38
588256--588316	31	2.0	30	87	3	86	63	4	0	31	1.15
591238--591272	18	2.0	18	88	5	54	37	0	2	60	1.12
592186--592256	33	2.2	32	78	11	76	46	5	1	46	1.35
594258--594371	20	5.5	20	70	13	70	45	27	1	25	1.63
595010--595169	43	3.7	43	80	2	160	22	20	16	41	1.90
595020--595190	43	4.0	42	76	9	148	20	21	17	40	1.92
595020--595187	86	1.9	86	82	5	205	20	20	17	41	1.91
609835--609872	17	2.2	17	95	0	67	18	44	23	13	1.85
611263--611301	17	2.3	17	81	0	51	28	2	7	61	1.37
617055--617102	19	2.5	20	90	6	66	16	25	31	27	1.97
617113--617166	5	10.0	5	77	15	54	18	51	22	7	1.70
617136--617173	17	2.2	17	100	0	76	18	47	23	10	1.79
617113--617166	22	2.5	22	100	0	108	18	51	22	7	1.70
619887--619922	15	2.5	14	86	8	54	52	0	2	44	1.15
619881--619923	16	2.8	15	82	10	52	53	0	2	44	1.13
620133--620275	60	2.4	60	76	8	146	35	15	12	36	1.85
624314--624354	18	2.3	18	91	0	64	68	0	2	29	1.03
631560--631636	22	3.5	22	78	3	75	38	22	14	24	1.91
631562--631646	44	1.9	44	83	4	109	36	22	15	25	1.93
635571--635616	18	2.6	18	100	0	92	28	8	23	39	1.84
636337--636380	18	2.4	19	77	11	56	54	0	4	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639093--639142	18	2.8	17	81	6	55	16	36	18	30	1.92
641751--641789	20	2.0	20	94	0	69	43	10	0	46	1.37
642642--642878	119	2.0	118	83	4	298	25	18	10	44	1.82
644644--644669	3	8.7	3	100	0	52	69	0	0	30	0.89
657406--657457	20	2.6	20	90	0	77	23	26	9	40	1.85
658948--658973	10	2.6	10	100	0	52	80	7	11	0	0.89
658935--658964	14	2.1	14	93	0	51	80	3	13	3	0.97
659816--659853	20	1.9	20	88	0	58	23	2	5	68	1.23
663830--663884	24	2.2	26	80	6	60	58	1	3	36	1.26
664682--664760	37	2.1	37	90	0	122	26	32	10	30	1.89
670411--670540	18	7.2	18	78	3	136	14	16	23	44	1.85
670409--670540	36	3.7	36	91	0	210	14	16	23	45	1.84
675062--675198	60	2.3	60	81	5	152	29	18	15	35	1.92
678175--678206	2	16.5	2	93	6	57	53	0	0	46	1.00
678313--678404	47	2.0	47	85	8	125	31	14	16	38	1.88
678495--678535	2	20.5	2	100	0	82	48	0	0	51	1.00
678942--679005	33	2.0	33	93	3	112	21	20	6	51	1.69
680059--680103	22	2.0	22	86	0	63	57	2	11	28	1.45
681000--681105	39	2.7	39	80	13	128	46	1	16	35	1.58
681013--681052	16	2.4	18	80	16	50	50	0	15	35	1.44
682844--682884	2	20.0	2	95	5	73	48	2	0	48	1.14
683372--683416	2	23.0	2	95	4	83	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694769--695012	13	19.0	13	92	2	334	41	15	27	15	1.87
695009--695071	6	10.5	6	91	0	99	33	19	30	17	1.95
701698--701742	21	2.2	20	84	11	56	37	8	4	48	1.55
711771--711803	14	2.4	14	94	0	57	15	42	27	15	1.86
711745--711798	23	2.3	23	87	0	81	14	37	27	20	1.92
713350--713417	23	2.9	23	88	2	100	23	20	17	38	1.93
719532--719574	19	2.5	16	78	14	50	34	0	0	65	0.93
720293--720318	13	2.0	13	100	0	52	61	7	7	23	1.49
720820--720886	21	3.2	21	79	10	66	23	20	23	31	1.98
725587--725626	21	1.9	21	89	0	62	10	25	40	25	1.86
733791--733852	23	2.7	23	84	0	88	14	29	22	33	1.94
733791--733860	23	3.0	22	81	8	86	17	27	22	32	1.96
734857--734916	2	30.0	2	100	0	120	50	0	0	50	1.00

Tables:   1   2   3

The End!