genome.fa.s8098.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008098.1 Hibiscus syriacus cultivar Beakdansim tig00110622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522112

Tables:   1   2   3   

This is table  2  of  3  ( 306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295818--295935	37	3.2	37	75	10	105	32	17	16	33	1.92
295865--295963	37	2.6	38	91	1	164	38	18	11	32	1.86
295828--295973	75	1.9	76	83	4	188	34	18	13	33	1.89
295828--295963	38	3.6	38	85	6	161	36	18	13	31	1.90
296298--296399	29	3.6	27	76	15	91	34	8	15	41	1.78
296362--296516	60	2.5	61	88	4	224	32	11	13	41	1.80
296482--296546	30	2.2	30	91	5	105	36	9	15	38	1.79
296421--296591	92	1.8	95	91	3	285	30	11	14	43	1.80
296421--296641	92	2.4	89	81	13	234	31	13	13	41	1.83
296874--297213	134	2.5	133	85	2	432	26	30	18	23	1.98
297419--297477	3	20.3	3	81	6	68	33	0	5	61	1.18
299000--299071	30	2.4	30	92	0	117	16	5	13	63	1.47
299000--299082	30	2.8	30	87	3	105	18	7	13	61	1.54
302088--302234	36	4.1	36	91	4	199	39	18	23	18	1.92
303489--303557	36	1.9	36	90	0	111	36	18	24	20	1.95
308342--308418	38	2.0	38	97	0	145	35	12	11	40	1.80
320882--320909	2	14.0	2	100	0	56	50	0	0	50	1.00
320991--321148	21	7.8	20	72	7	86	38	25	17	18	1.92
321115--321344	20	11.5	20	80	5	223	37	24	18	19	1.94
322027--322073	24	2.0	24	87	8	69	25	14	21	38	1.92
324568--324697	19	7.7	18	66	25	79	44	19	20	15	1.86
324546--324691	33	4.5	33	84	6	190	45	19	20	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324687--324803	53	2.2	53	98	1	227	13	23	17	44	1.85
324706--324803	19	5.4	19	84	13	143	14	22	17	45	1.84
324909--324945	14	2.6	14	91	0	65	45	21	0	32	1.52
326866--327038	19	9.6	19	78	12	159	46	23	18	10	1.81
326960--327016	14	3.7	14	77	20	60	45	22	21	10	1.82
326941--327033	33	2.8	33	93	0	159	48	21	19	10	1.79
326903--327038	52	2.6	51	75	7	139	47	23	19	9	1.78
327034--327162	19	7.3	19	75	17	116	8	16	28	46	1.76
327034--327125	33	2.8	33	93	3	150	7	18	28	45	1.76
327210--327584	93	4.1	93	96	1	691	45	18	12	22	1.83
328267--328363	20	5.2	20	72	18	100	46	17	24	11	1.81
328265--328329	21	3.1	21	82	4	96	47	15	26	10	1.78
328314--328370	14	3.7	14	75	20	60	43	22	24	8	1.81
328265--328387	33	3.5	33	90	8	165	46	18	24	10	1.81
328404--328460	14	3.7	14	75	20	60	8	24	22	43	1.81
328388--328468	33	2.5	33	95	0	144	8	22	22	46	1.78
328445--328520	21	3.7	21	83	3	109	11	25	17	46	1.82
328444--328521	41	1.9	41	97	0	147	12	25	16	44	1.83
328600--328670	33	2.2	33	89	0	106	47	16	22	12	1.80
328852--328906	22	2.5	22	75	0	65	21	16	38	23	1.93
329053--329246	20	9.6	20	81	5	212	19	19	25	36	1.95
329053--329246	60	3.2	60	82	0	244	19	19	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329233--329315	21	4.0	21	73	6	78	25	16	24	33	1.96
329213--329311	42	2.4	43	77	11	100	21	18	23	37	1.94
336764--336969	74	2.7	74	86	3	261	23	31	24	20	1.98
342686--342725	21	1.9	21	89	0	62	25	40	25	10	1.86
344679--344729	9	6.2	8	76	19	52	13	0	27	58	1.36
344681--344724	17	2.6	17	85	7	63	13	0	29	56	1.38
345375--345498	54	2.3	54	90	0	185	22	31	23	22	1.98
350964--350995	6	5.3	6	92	0	55	37	0	0	62	0.95
356439--356491	21	2.5	21	87	0	79	20	24	18	35	1.95
356481--356673	20	9.6	20	93	0	323	40	19	19	20	1.91
356660--356726	20	3.3	20	89	0	98	31	23	19	25	1.98
357568--357621	24	2.2	24	90	6	83	22	16	20	40	1.91
360054--360142	20	4.4	20	88	2	135	34	25	21	17	1.96
360054--360142	40	2.2	40	94	4	153	34	25	21	17	1.96
360114--360209	33	2.8	33	88	3	138	42	19	23	13	1.87
360224--360319	33	2.9	34	90	3	149	12	23	20	42	1.86
360246--360299	14	3.5	14	73	22	54	11	24	20	44	1.83
360425--360461	14	2.6	14	86	0	56	48	21	0	29	1.50
361843--361952	42	2.6	42	76	8	109	23	19	36	20	1.95
362434--362502	20	3.5	20	89	0	93	33	21	20	24	1.97
362547--362653	20	5.3	20	89	0	160	22	18	20	38	1.94
362526--362653	40	3.3	40	85	6	160	20	19	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362523--362708	40	5.2	33	77	12	122	18	18	19	44	1.88
364620--364673	20	2.7	20	88	0	81	53	24	11	11	1.68
365049--365102	22	2.5	22	90	6	83	24	12	40	22	1.89
365302--365354	20	2.7	20	93	0	88	18	18	22	39	1.92
365344--365396	21	2.5	21	90	0	88	33	18	24	22	1.97
365612--365672	30	2.0	30	96	0	113	29	22	14	32	1.94
366519--366555	16	2.2	18	85	9	51	62	2	2	32	1.23
367223--367932	223	3.1	227	94	2	1250	44	7	7	39	1.62
368209--368255	20	2.4	19	89	10	76	55	10	17	17	1.69
367998--368469	181	2.6	181	89	2	678	42	14	16	26	1.86
368390--368436	20	2.4	18	80	19	58	53	10	14	21	1.71
370652--370716	21	3.1	21	76	8	69	40	12	29	18	1.87
370750--370815	33	2.0	33	90	0	105	28	0	48	22	1.51
372600--372644	19	2.4	19	92	0	72	28	2	11	57	1.45
372763--373727	199	4.9	198	95	1	1726	37	15	15	31	1.89
372763--373727	397	2.4	396	95	1	1742	37	15	15	31	1.89
373688--373739	21	2.3	23	70	12	54	38	9	13	38	1.77
376219--377074	183	4.7	183	96	0	1527	33	14	16	34	1.90
379542--379601	25	2.4	25	88	0	84	33	8	15	43	1.76
379926--379988	23	2.7	23	90	4	92	34	4	20	39	1.74
379926--379998	23	3.2	23	82	7	85	32	4	21	41	1.72
380002--380041	21	1.9	21	84	0	53	32	15	7	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380418--380454	18	2.1	18	89	0	56	32	5	10	51	1.60
380410--380456	24	2.0	24	86	0	67	34	4	14	46	1.64
380726--380791	34	1.9	34	96	0	123	48	18	16	16	1.82
381215--381287	23	3.2	23	84	0	92	34	4	20	41	1.72
382745--382790	24	1.9	24	100	0	92	21	21	23	32	1.98
386422--386993	255	2.2	247	86	8	785	27	11	18	41	1.85
387220--387251	15	2.2	14	94	5	55	81	9	0	9	0.88
387375--387421	18	2.7	18	86	3	60	27	27	10	34	1.90
387720--387773	21	2.6	21	96	0	99	35	16	24	24	1.95
387720--387918	95	2.1	95	84	5	251	32	15	25	27	1.95
387813--387868	22	2.7	20	84	10	76	30	16	28	25	1.96
387740--387961	95	2.3	95	80	7	236	32	13	25	27	1.94
388693--388797	32	3.2	32	66	24	90	32	14	22	30	1.94
388665--388852	68	2.8	68	90	2	299	32	14	24	28	1.94
388805--389182	81	4.7	80	89	2	553	36	14	23	25	1.92
402492--402538	23	2.0	23	87	0	67	44	17	10	27	1.81
420184--420230	3	16.0	3	87	12	71	34	0	0	65	0.93
420182--420230	19	2.6	18	93	6	80	34	0	0	65	0.93
420184--420232	16	3.0	17	88	11	84	34	0	0	65	0.93
423065--423165	51	2.0	51	92	0	166	43	8	14	32	1.77
425409--425450	16	2.6	16	82	10	50	57	4	4	33	1.41
431145--431200	28	2.0	28	100	0	112	14	21	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432416--432469	19	2.8	19	94	2	90	31	25	16	25	1.97
432498--432603	20	5.2	20	80	6	133	28	27	20	23	1.99
432496--432633	61	2.3	61	79	0	168	31	23	20	24	1.98
432773--432845	22	3.3	22	88	0	74	20	36	16	26	1.93
433205--433253	20	2.5	20	86	0	62	20	18	24	36	1.94
433221--433276	20	2.8	20	91	0	85	12	16	21	50	1.78
433240--433283	20	2.2	20	91	0	70	11	13	20	54	1.69
435305--435441	34	3.9	34	74	11	130	35	21	21	20	1.96
435286--435445	20	8.6	19	64	19	79	36	21	21	20	1.95
435297--435441	74	2.0	74	92	0	245	36	20	21	21	1.95

Tables:   1   2   3