genome.fa.s8098.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008098.1 Hibiscus syriacus cultivar Beakdansim tig00110622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522112

Tables:   1   2   3   

This is table  3  of  3  ( 306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435484--435596	20	5.7	20	91	1	138	19	18	23	38	1.93
435583--435626	20	2.2	20	100	0	88	13	11	22	52	1.72
435504--435616	40	2.8	40	81	2	111	19	17	23	38	1.93
436104--436206	21	4.9	21	75	4	91	20	34	20	24	1.96
436104--436215	42	2.7	42	77	0	125	19	36	18	25	1.94
437589--437654	30	2.2	30	97	0	123	30	1	13	54	1.48
437627--437741	54	2.1	54	85	3	160	33	2	14	48	1.58
437804--438061	20	13.9	20	72	15	142	22	20	21	35	1.96
437897--438053	54	2.9	54	94	0	260	19	21	22	36	1.95
437761--437999	74	3.2	74	83	4	286	21	20	21	36	1.95
437804--438058	74	3.5	74	83	5	241	21	20	21	35	1.96
438236--438270	18	1.9	18	94	0	61	20	2	22	54	1.58
441360--441428	20	3.5	20	89	0	111	21	20	28	28	1.98
441462--441527	21	3.2	19	72	10	51	36	22	16	24	1.94
442316--442342	2	13.5	2	100	0	54	51	0	0	48	1.00
443916--443950	18	1.9	18	94	0	61	22	34	22	20	1.97
444193--444275	32	2.7	30	74	9	85	28	24	7	39	1.82
446520--446594	30	2.5	29	77	14	80	38	4	4	53	1.39
452522--452584	32	2.0	32	90	0	99	49	14	19	17	1.80
455778--455850	31	2.3	31	81	6	85	46	9	5	38	1.60
456702--456785	31	2.7	31	81	7	91	41	4	10	42	1.60
466563--466663	51	2.0	48	94	5	175	31	19	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474321--474485	81	2.0	81	90	4	260	37	7	24	30	1.82
474703--474744	20	2.0	22	86	13	61	45	0	2	52	1.13
478063--478536	182	2.6	182	89	0	707	43	13	15	27	1.85
478457--478503	20	2.4	19	82	10	67	53	10	17	19	1.72
478466--478508	20	2.3	19	88	11	63	51	11	16	20	1.75
480643--480675	15	2.2	15	94	0	57	18	9	63	9	1.49
480813--480878	33	2.0	33	93	0	114	30	0	46	22	1.52
481083--481138	15	3.5	15	71	21	51	53	1	42	1	1.21
481067--481154	33	2.7	33	92	3	142	51	1	45	2	1.21
482705--482753	19	2.5	20	90	9	84	30	2	10	57	1.43
482988--483574	199	2.9	200	95	0	1059	36	14	18	30	1.90
485074--485110	18	2.1	18	89	0	56	40	10	29	18	1.85
485083--485128	12	3.8	12	88	0	65	41	6	32	19	1.77
485083--485128	6	7.7	6	82	0	56	41	6	32	19	1.77
486414--486763	185	1.9	184	92	1	594	37	13	14	34	1.85
489462--490482	181	5.6	182	93	1	1712	42	13	16	28	1.85
490609--490665	23	2.4	23	79	2	69	36	15	12	35	1.85
490618--490780	87	1.9	87	96	0	299	33	13	11	42	1.79
490702--490746	23	2.0	23	86	0	63	37	15	8	37	1.79
490864--490894	16	1.9	16	100	0	62	38	35	12	12	1.82
502569--502645	31	2.5	31	76	0	82	45	7	5	41	1.55
503063--503140	32	2.4	31	77	8	75	39	7	1	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503086--503151	16	4.1	16	69	7	53	40	6	0	53	1.26
503325--503365	2	21.0	2	95	5	75	51	0	0	48	1.00
508142--508590	229	2.0	227	94	0	790	45	7	7	39	1.61
508655--508700	20	2.3	19	89	10	74	54	10	17	17	1.70
511089--511153	21	3.1	21	80	6	69	40	15	29	15	1.88
511186--511251	33	2.0	33	90	0	105	28	0	48	22	1.51
513043--513090	18	2.6	19	90	3	71	31	2	10	56	1.45
513608--514686	195	5.5	197	95	3	1945	37	15	15	31	1.90
513194--514678	389	3.8	394	91	6	2506	36	15	16	31	1.90
515996--516057	18	3.4	18	79	0	79	37	9	35	17	1.83
515996--516087	6	15.3	6	79	0	67	36	7	34	20	1.81
516011--516091	3	27.0	3	75	0	72	35	6	34	23	1.80
515999--516075	36	2.1	36	90	0	118	35	9	35	20	1.85
515999--516087	12	7.4	12	84	0	88	35	7	34	21	1.82
515996--516087	18	5.1	18	77	0	76	36	7	34	20	1.81
517450--517494	22	2.0	22	83	8	56	42	11	8	37	1.72
517501--518205	183	3.9	183	96	0	1256	35	14	16	33	1.89
520644--520708	25	2.6	25	77	0	76	35	9	12	43	1.74
520982--521029	21	2.2	23	78	14	57	41	12	10	35	1.77
521046--521109	23	2.8	23	87	0	92	35	6	20	37	1.78
521046--521118	23	3.2	23	82	7	85	34	5	20	39	1.76
521376--521439	25	2.6	25	82	5	76	35	7	18	37	1.80

Tables:   1   2   3

The End!