genome.fa.s8104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008104.1 Hibiscus syriacus cultivar Beakdansim tig00110634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  639954

Tables:   1   2   

This is table  1  of  2  ( 230 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760--1825	33	2.0	33	87	0	96	28	1	45	24	1.62
3600--3634	18	1.9	18	94	0	61	34	2	11	51	1.53
3721--5112	198	7.1	198	94	3	2356	37	15	15	32	1.88
6565--6632	21	3.4	18	69	21	55	36	8	35	19	1.83
6565--6656	6	15.3	6	79	0	67	36	7	34	20	1.81
6580--6660	3	27.0	3	75	0	72	35	6	34	23	1.80
6565--6656	42	2.2	42	90	0	148	36	7	34	20	1.81
6565--6660	12	8.0	12	82	0	84	36	7	34	21	1.82
6568--6660	18	5.2	18	77	0	78	35	7	34	22	1.83
8125--8793	184	3.7	184	96	0	1236	35	14	15	34	1.89
11348--11411	23	2.8	23	87	0	92	35	6	20	37	1.78
11348--11420	23	3.2	23	82	7	85	34	5	20	39	1.76
11769--11833	23	2.8	23	90	0	94	35	7	18	38	1.80
12037--12073	18	2.1	18	89	0	56	32	5	10	51	1.60
12029--12075	24	2.0	24	86	0	67	34	4	14	46	1.64
13391--13523	21	6.5	21	77	5	101	21	21	21	36	1.96
13396--13504	41	2.7	41	84	4	132	21	19	21	38	1.94
14477--14522	21	2.2	21	92	0	74	32	26	19	21	1.97
20345--20392	19	2.5	19	96	0	87	27	20	29	22	1.99
20360--20520	64	2.5	65	76	8	168	31	21	20	26	1.98
21291--21608	103	3.1	103	95	0	564	26	12	23	36	1.91
21629--21695	23	2.9	23	84	0	80	22	25	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27018--27243	103	2.2	103	91	1	355	26	13	22	38	1.91
27252--27314	23	2.7	23	92	0	99	19	28	26	25	1.98
32216--32706	241	2.0	240	97	1	921	40	13	9	35	1.78
33674--33723	25	2.0	25	96	0	91	34	16	14	36	1.88
35557--35601	22	2.1	21	87	4	63	55	4	0	40	1.20
36256--36297	21	2.0	20	86	4	57	38	14	7	40	1.73
45357--45389	12	2.8	12	100	0	66	42	21	18	18	1.89
46309--46353	23	1.9	23	86	13	65	42	13	6	37	1.70
52345--52489	72	2.0	72	100	0	290	29	13	15	41	1.85
54924--54958	14	2.5	14	90	0	52	68	25	2	2	1.17
59165--59241	26	3.0	26	90	0	109	32	10	9	48	1.69
68364--68390	3	9.0	3	100	0	54	33	0	0	66	0.92
69263--69372	30	3.6	30	80	6	123	41	10	9	38	1.72
69984--70027	23	2.0	22	86	4	61	9	15	20	54	1.68
72389--72413	12	2.1	12	100	0	50	16	0	0	84	0.63
79990--80018	14	2.0	15	93	6	51	62	6	0	31	1.22
80119--80156	19	2.0	19	89	0	58	34	13	7	44	1.72
81944--81989	23	2.0	23	100	0	92	30	8	17	43	1.79
95073--95150	8	10.1	8	75	10	56	29	0	2	67	1.03
95093--95150	11	5.2	11	75	19	57	25	0	3	70	1.03
95094--95150	15	3.8	15	81	6	62	24	0	3	71	1.01
98221--98281	32	1.9	32	89	0	95	16	4	21	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99268--99749	83	5.8	83	85	1	572	30	21	14	33	1.93
99268--99747	249	1.9	249	85	0	665	30	21	14	33	1.93
110172--111166	279	3.6	279	84	3	1201	28	25	15	30	1.96
110889--111607	219	3.3	221	85	5	917	26	25	16	31	1.96
111549--111665	57	2.1	57	82	6	139	37	21	16	24	1.93
112754--112794	23	1.9	21	85	14	57	2	48	0	48	1.14
113520--113544	3	8.3	3	100	0	50	64	0	36	0	0.94
123168--123214	2	23.5	2	100	0	94	48	0	0	51	1.00
139692--139747	3	19.0	3	96	3	105	32	0	0	67	0.91
142848--142904	20	2.8	21	78	10	73	17	22	33	26	1.96
151415--151452	19	2.0	19	100	0	76	26	0	21	52	1.47
151660--151718	26	2.3	25	79	2	64	57	20	20	1	1.49
152167--152206	21	1.9	21	85	10	55	30	7	0	62	1.23
152312--152360	19	2.8	17	79	17	55	42	2	2	53	1.24
152679--152714	18	2.0	18	89	10	56	38	0	0	61	0.96
152389--152780	158	2.5	157	78	12	405	39	8	7	43	1.64
152389--152826	157	2.8	154	75	12	414	39	8	7	44	1.63
158305--158399	9	10.7	9	70	21	51	21	6	2	70	1.20
158356--158424	25	2.7	25	79	18	72	28	2	1	66	1.14
159472--159500	13	2.1	14	93	6	51	13	27	13	44	1.82
161708--161778	35	2.0	35	88	0	106	25	11	12	50	1.73
170203--170238	16	2.2	16	90	9	56	25	25	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172466--172521	21	2.7	21	80	0	67	7	32	39	21	1.80
189638--189954	42	7.4	44	74	10	196	23	17	6	51	1.70
189638--189966	43	7.7	43	71	8	190	24	18	6	50	1.71
195674--195723	26	2.0	26	84	4	66	38	2	4	56	1.30
196161--196294	3	44.7	3	100	0	268	66	0	0	33	0.92
198177--198217	12	3.2	13	83	12	50	48	4	0	46	1.23
211017--211073	15	3.7	15	77	9	69	15	26	35	22	1.94
211005--211073	32	2.2	32	91	0	111	18	26	31	23	1.97
216027--216078	23	2.2	23	96	3	95	48	13	7	30	1.71
220369--220450	41	2.0	41	95	0	146	29	25	8	36	1.86
238651--238693	17	2.5	17	88	3	59	23	0	32	44	1.54
243187--243230	2	22.0	2	100	0	88	50	0	0	50	1.00
243330--243405	2	38.0	2	100	0	152	50	0	0	50	1.00
243520--243576	2	28.5	2	100	0	114	49	0	0	50	1.00
246153--246217	21	3.1	21	68	24	64	41	10	4	43	1.60
246450--246482	17	1.9	17	93	0	57	57	18	0	24	1.40
261054--261152	49	2.0	49	100	0	198	44	21	6	28	1.75
261157--261181	2	12.5	2	100	0	50	52	0	0	48	1.00
261579--261639	21	3.2	21	65	29	64	42	21	4	31	1.74
261531--261640	35	3.1	35	92	3	168	43	20	4	31	1.71
261617--261709	34	2.7	35	93	5	161	36	18	8	36	1.81
261528--261682	72	2.2	73	81	9	185	41	19	5	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266238--266298	21	3.2	21	65	29	64	42	21	4	31	1.74
266187--266305	35	3.3	36	90	4	188	43	20	5	31	1.73
266391--266447	2	28.5	2	100	0	114	50	0	0	49	1.00
272265--272303	17	2.2	17	86	4	51	28	10	12	48	1.74
278510--278552	12	3.8	11	79	14	52	44	0	0	55	0.99
291211--291249	17	2.3	17	90	0	60	30	23	23	23	1.99
297582--297609	2	14.0	2	100	0	56	50	0	0	50	1.00
298516--298560	15	3.1	15	77	6	56	57	0	0	42	0.98
298519--298578	31	1.9	30	83	12	77	63	1	0	35	1.05
301853--302380	145	3.7	142	81	6	579	21	23	24	30	1.99
312896--312955	31	1.9	32	89	3	95	31	11	10	46	1.73
313150--313195	21	2.1	21	88	4	65	47	4	13	34	1.62
321569--321644	2	38.0	2	100	0	152	50	0	0	50	1.00
328661--328735	2	37.5	2	100	0	150	49	0	0	50	1.00
329458--329502	21	2.1	21	83	0	54	37	2	2	57	1.23
331185--331213	2	15.0	2	92	7	51	48	0	0	51	1.00
338862--339100	87	2.7	87	96	0	442	43	9	14	32	1.77
341308--341554	120	2.1	120	92	0	404	38	15	12	33	1.86
341143--341737	303	2.0	303	95	1	1068	34	16	14	34	1.89
341428--342200	183	4.2	183	94	0	1330	34	16	14	35	1.89
341427--342200	367	2.1	367	94	0	1352	34	16	14	35	1.89
343025--343087	33	1.9	33	93	0	108	20	47	1	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343124--343167	21	2.1	21	91	0	70	15	31	11	40	1.83
345228--345272	23	2.0	23	86	0	63	26	28	24	20	1.99
345254--345550	149	2.0	149	97	0	567	37	19	16	26	1.92
345632--345701	30	2.3	30	85	4	88	32	22	8	35	1.85
345723--345794	29	2.5	29	95	0	126	38	11	9	40	1.74
346096--346246	66	2.3	67	88	2	223	15	26	28	29	1.96
346225--346267	21	2.0	21	86	0	59	16	25	27	30	1.97
347712--348129	181	2.3	180	87	2	577	27	16	13	42	1.86
349949--349996	24	2.0	23	84	4	60	77	2	18	2	0.97
352634--352681	25	1.9	25	87	8	71	33	4	0	62	1.14

Tables:   1   2