genome.fa.s8104.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008104.1 Hibiscus syriacus cultivar Beakdansim tig00110634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  639954

Tables:   1   2   

This is table  2  of  2  ( 230 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359755--359803	15	3.3	14	77	11	53	59	0	2	38	1.09
360204--360267	31	2.1	31	96	0	119	40	15	10	32	1.82
361300--361337	3	12.7	3	100	0	76	0	31	0	68	0.90
363454--363495	20	2.1	20	95	0	75	30	14	28	26	1.95
363716--363754	20	2.0	20	94	0	69	33	15	28	23	1.95
363286--363807	259	2.0	259	95	0	927	37	16	16	28	1.91
364551--364619	3	23.0	3	100	0	138	0	33	0	66	0.92
364497--364740	121	2.0	121	98	0	470	17	30	4	47	1.66
364672--364807	3	45.7	3	91	4	222	0	34	0	65	0.93
364954--365003	3	16.7	3	100	0	100	0	32	0	68	0.90
365044--365082	3	13.0	3	100	0	78	0	33	0	66	0.92
364900--365266	181	2.0	185	94	4	654	21	28	5	44	1.74
365135--365179	3	15.0	3	100	0	90	0	33	0	66	0.92
365234--365335	3	33.7	3	94	2	177	0	35	0	64	0.94
365482--365552	3	23.7	3	91	5	108	2	32	0	64	1.08
365267--365768	217	2.3	216	95	1	934	21	26	8	43	1.80
365697--365811	3	38.3	3	100	0	230	0	33	0	66	0.92
366196--366227	3	10.7	3	100	0	64	0	31	0	68	0.90
366309--366358	3	16.7	3	100	0	100	0	32	0	68	0.90
372553--372598	18	2.5	17	86	10	56	65	0	2	32	1.05
372553--372592	17	2.2	18	86	8	55	65	0	2	32	1.06
372555--372597	20	2.2	19	83	8	50	67	0	2	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373477--373535	16	3.9	15	80	10	66	67	1	1	28	1.10
373762--373808	24	2.0	22	88	8	67	14	10	4	70	1.31
374948--374972	4	6.2	4	100	0	50	52	0	0	48	1.00
383883--384038	21	7.4	21	71	16	117	20	18	25	35	1.95
383874--384064	42	4.5	42	90	3	303	21	18	23	37	1.94
389734--389763	13	2.2	14	94	5	53	26	0	3	70	1.03
391622--391668	3	15.7	3	100	0	94	65	0	0	34	0.93
392795--392856	31	2.0	32	90	3	99	30	6	6	56	1.50
393764--393792	2	14.5	2	100	0	58	51	0	48	0	1.00
393859--393894	16	2.2	16	90	0	54	38	2	8	50	1.47
393861--393894	10	3.4	10	83	0	50	38	2	8	50	1.49
397744--397779	18	2.1	17	89	5	54	47	0	0	52	1.00
401591--401626	18	2.1	17	89	5	54	47	0	0	52	1.00
404024--404186	81	2.0	81	96	0	299	25	17	19	38	1.93
407117--407146	2	15.0	2	100	0	60	50	0	0	50	1.00
426030--426210	42	4.5	42	83	9	243	35	24	19	20	1.96
426032--426252	21	10.9	20	69	17	136	35	23	19	21	1.96
426030--426181	78	1.9	78	98	0	295	36	25	19	19	1.95
426030--426252	63	3.6	62	76	16	221	35	23	19	21	1.96
426135--426260	19	6.1	19	69	18	56	36	22	19	22	1.95
426256--426308	21	2.5	21	87	0	79	16	18	32	32	1.94
426529--426578	2	25.0	2	100	0	100	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429740--429881	59	2.4	59	84	4	180	36	13	13	36	1.84
429795--429912	60	2.0	60	83	3	148	40	11	11	36	1.77
442320--442357	20	1.9	20	88	0	58	39	10	5	44	1.61
445420--445806	184	2.1	183	90	2	609	45	8	3	42	1.50
446861--446901	20	2.0	20	85	0	55	60	0	4	34	1.18
447992--448144	60	2.5	60	73	6	148	33	24	4	37	1.76
449142--449197	30	2.0	27	86	10	76	37	1	0	60	1.07
468711--468745	2	17.5	2	100	0	70	51	0	0	48	1.00
470591--471000	189	2.2	191	85	4	560	45	9	6	38	1.62
472462--472486	3	8.3	3	100	0	50	32	0	0	68	0.90
473261--473392	51	2.6	51	80	3	160	17	32	28	21	1.96
473515--473544	10	3.0	10	95	0	51	33	30	0	36	1.58
473587--473625	18	2.2	18	90	4	62	30	2	2	64	1.21
473689--473910	111	2.0	111	94	0	390	35	8	11	45	1.70
480263--480313	16	3.2	17	71	23	56	43	0	19	37	1.51
486291--486560	20	13.8	20	79	9	225	36	24	17	20	1.94
486328--486556	59	3.8	60	83	5	259	34	25	17	22	1.95
486328--486556	79	2.9	80	86	5	270	34	25	17	22	1.95
489237--489301	18	3.7	18	80	10	71	41	7	23	27	1.81
489869--489986	33	3.5	33	80	14	134	43	37	7	11	1.70
489894--489996	35	3.0	36	80	8	108	46	33	6	12	1.68
495273--495481	93	2.3	92	80	2	240	31	15	7	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496376--496426	21	2.4	22	83	6	70	21	0	9	68	1.18
501436--501573	38	3.5	39	83	10	158	52	5	16	26	1.64
502744--502784	21	2.0	21	95	0	73	58	2	7	31	1.38
516118--516182	32	2.0	32	87	0	94	40	9	6	44	1.61
521567--521693	35	3.6	35	91	0	182	40	22	1	35	1.64
521567--521713	35	4.2	35	89	0	177	40	21	1	37	1.62
521709--521783	35	2.1	35	82	4	89	34	0	21	44	1.53
531813--531838	10	2.6	10	100	0	52	65	0	0	34	0.93
532095--532129	16	2.2	16	90	5	54	37	0	20	42	1.52
542778--542816	15	2.6	15	88	8	53	25	33	33	7	1.84
548084--548283	48	4.2	48	81	2	159	27	34	22	16	1.95
548149--548340	48	4.0	48	83	5	210	30	33	20	15	1.94
550352--550396	23	2.0	23	90	0	72	31	13	13	42	1.82
551304--551347	17	2.6	17	100	0	88	4	34	13	47	1.63
553651--553678	4	7.0	4	100	0	56	50	25	0	25	1.50
555043--555463	213	2.0	211	94	1	736	26	21	17	34	1.95
557709--557741	17	1.9	17	88	11	50	12	12	18	57	1.64
558050--558136	7	12.6	7	76	11	81	55	24	0	20	1.44
572618--572654	2	19.0	2	94	5	67	51	0	0	48	1.00
578021--578076	21	2.7	21	76	13	62	12	25	37	25	1.91
586581--586658	37	2.2	36	81	4	86	41	32	10	16	1.82
589727--589755	15	1.9	15	100	0	58	20	24	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609298--609331	17	1.9	18	88	5	52	29	2	0	67	1.05
616938--616971	13	2.7	12	86	13	50	41	5	0	52	1.25
618218--618259	20	2.0	22	86	9	61	45	2	0	52	1.13
620275--620323	20	2.5	20	93	6	82	16	28	24	30	1.96
620275--620348	30	2.5	29	77	16	80	17	27	27	28	1.98
620275--620331	20	2.8	19	87	10	78	17	28	26	28	1.98
620351--620407	5	10.6	5	78	14	60	19	50	22	7	1.71
620351--620415	22	3.0	22	97	0	121	18	47	23	10	1.79
620344--620381	17	2.2	17	100	0	76	18	47	23	10	1.79
620409--620435	7	3.9	7	100	0	54	14	25	29	29	1.95
621304--621435	63	2.1	62	82	9	153	16	27	28	27	1.97
621304--621435	31	4.2	32	73	9	94	16	27	28	27	1.97
627607--627697	10	9.4	9	75	13	83	15	26	28	29	1.96
627606--627697	19	4.7	20	80	14	102	16	26	28	29	1.97
627606--627680	29	2.5	30	91	8	127	16	26	28	29	1.96
627700--627762	5	11.8	5	77	12	63	19	52	20	7	1.70
627693--627769	22	3.5	22	98	0	145	18	48	22	11	1.80
628644--628767	63	2.0	63	81	9	146	16	28	29	26	1.97
631466--631520	3	17.7	3	92	7	92	34	0	0	65	0.93
631466--631535	25	2.7	25	86	10	79	34	2	0	62	1.10
636039--636100	31	2.0	31	93	0	106	24	37	14	24	1.93
637659--637689	15	2.0	16	93	6	55	58	0	0	41	0.98

Tables:   1   2

The End!