genome.fa.s8110.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008110.1 Hibiscus syriacus cultivar Beakdansim tig00110646_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  844371

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210848--211325	165	2.8	167	86	4	622	35	19	17	27	1.95
212129--212167	21	1.9	19	85	10	51	38	0	7	53	1.30
212142--212197	29	1.9	29	82	7	69	37	0	8	53	1.32
212129--212239	52	2.1	52	80	11	120	36	1	9	52	1.44
212268--212331	2	32.5	2	90	9	105	48	1	0	50	1.10
212303--212355	17	3.2	16	82	10	54	43	7	0	49	1.31
212355--214120	6	295.8	6	97	2	3346	50	33	0	16	1.46
214125--214628	4	126.2	4	99	0	1001	24	0	25	50	1.50
216515--216674	79	2.0	79	98	0	311	48	8	7	35	1.62
218733--219106	183	2.0	184	90	2	592	43	3	7	45	1.48
223257--223334	3	25.7	3	86	2	66	44	0	0	55	0.99
224640--224679	13	3.0	13	82	7	53	35	2	0	62	1.09
224842--224873	11	2.9	11	95	0	55	37	6	0	56	1.25
228689--228720	15	2.1	15	94	0	55	25	18	9	46	1.79
233858--233891	11	3.2	11	83	8	52	88	0	11	0	0.52
233860--233889	15	1.9	16	93	6	53	86	0	13	0	0.57
235038--235670	83	7.6	83	96	1	1067	26	13	22	37	1.91
236402--237185	113	7.0	113	95	0	1351	35	15	19	30	1.93
237408--237485	3	25.7	3	89	2	120	37	0	0	62	0.95
239000--239031	11	2.9	11	95	0	55	37	6	0	56	1.25
242474--242527	20	2.7	20	74	8	56	25	12	24	37	1.91
253638--253715	32	2.4	33	82	8	97	26	17	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253666--253728	33	2.0	31	84	6	81	25	20	12	41	1.88
256824--256859	11	3.3	11	84	0	54	22	2	0	75	0.94
264840--264907	31	2.2	31	97	0	127	20	11	23	44	1.84
272897--272957	30	2.0	30	93	0	104	24	14	21	39	1.91
282413--282482	29	2.3	31	80	7	81	22	17	11	48	1.79
282768--282837	29	2.3	31	80	7	81	22	18	11	47	1.81
282375--283090	357	2.0	355	94	4	1266	31	13	15	39	1.86
283394--283627	115	2.0	117	97	1	445	31	14	17	35	1.90
285960--286017	29	2.0	29	96	0	107	62	15	5	17	1.50
286876--287039	85	1.9	84	81	7	197	32	21	16	29	1.95
290202--290230	15	1.9	15	100	0	58	41	13	13	31	1.84
291140--291176	17	2.2	17	100	0	74	43	0	24	32	1.55
292045--292076	8	4.0	8	91	0	55	65	0	34	0	0.93
303480--303537	29	2.0	29	96	0	107	62	15	3	18	1.47
305369--305401	12	2.7	13	86	13	52	9	12	45	33	1.73
307594--308518	182	5.1	182	91	1	1437	41	14	16	27	1.87
307594--308518	362	2.5	364	90	1	1464	41	14	16	27	1.87
309720--309760	19	2.2	19	95	0	73	34	2	9	53	1.47
309810--309858	19	2.6	19	90	0	80	32	2	8	57	1.40
310283--311259	201	4.9	201	89	2	1374	37	14	15	32	1.88
314152--314204	24	2.2	24	82	0	61	37	1	13	47	1.54
315454--316844	199	7.0	199	86	4	1758	38	14	16	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315454--316844	399	3.5	398	87	3	1854	38	14	16	31	1.88
318146--318193	19	2.5	19	96	0	87	31	6	10	52	1.60
320679--321357	200	3.4	200	87	2	911	37	14	15	32	1.88
321398--321560	87	1.9	87	92	0	272	34	14	9	41	1.78
322866--322906	18	2.2	19	95	4	75	46	24	4	24	1.72
324850--324890	18	2.2	19	95	4	75	46	24	4	24	1.72
326207--326251	20	2.1	22	84	8	58	31	6	0	62	1.21
329537--329727	96	2.0	96	86	2	267	35	19	22	21	1.96
330243--330332	25	3.7	22	72	20	54	46	1	0	52	1.07
330421--330493	23	3.1	23	78	5	76	45	1	1	52	1.18
330445--330490	24	2.0	23	83	12	58	45	2	0	52	1.13
330641--330700	21	2.9	21	75	15	54	56	0	0	43	0.99
330662--330717	23	2.3	23	84	6	67	48	0	0	51	1.00
330636--330748	21	5.5	21	63	23	53	52	0	0	46	1.06
332181--332318	59	2.3	59	82	7	156	39	14	13	33	1.85
334626--334669	19	2.5	17	80	16	54	25	18	11	45	1.82
334633--334676	19	2.4	19	92	3	72	25	25	9	40	1.84
335444--335485	21	2.0	21	90	0	66	30	11	7	50	1.66
335480--335583	33	3.2	33	91	1	165	30	7	14	47	1.72
335723--335752	16	1.9	16	93	6	53	33	13	6	46	1.69
343151--343187	20	2.0	19	85	15	51	59	5	5	29	1.42
345978--346084	42	2.6	41	79	2	124	29	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346491--346594	42	2.5	41	79	3	127	31	24	20	24	1.98
346743--346849	42	2.6	42	80	1	135	29	20	20	28	1.98
349850--349930	25	3.3	25	82	5	94	54	12	3	29	1.55
349903--349940	19	2.0	19	89	0	58	55	13	0	31	1.38
352116--352470	173	2.0	178	95	3	639	33	9	16	40	1.81
355268--355394	48	2.6	48	86	5	128	53	12	14	19	1.72
355286--355377	26	3.7	26	66	28	65	52	14	14	19	1.75
355302--355394	48	1.9	48	95	0	168	53	11	15	19	1.72
355313--355396	25	3.5	23	74	19	73	53	10	14	21	1.70
357259--357539	121	2.3	123	86	6	376	27	16	22	33	1.95
357463--357890	125	3.4	126	86	1	574	25	19	24	31	1.98
362988--363114	63	2.0	63	90	0	200	39	17	21	22	1.92
365021--365045	5	5.0	5	100	0	50	80	0	0	20	0.72
365035--365146	51	2.2	51	88	3	163	57	9	11	21	1.63
365062--365146	25	3.3	26	66	16	61	56	9	14	20	1.65
367021--367076	3	20.0	3	79	20	59	28	0	1	69	0.98
368511--368548	12	3.2	12	85	3	51	28	2	2	65	1.19
368665--368859	108	1.8	108	85	0	273	40	10	7	42	1.66
368869--368910	2	22.0	2	90	9	70	50	0	0	50	1.00
373827--373864	2	19.0	2	100	0	76	50	0	0	50	1.00
374163--374214	19	2.8	19	88	8	72	78	3	17	0	0.89
374466--374525	29	2.0	31	90	6	97	35	6	16	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374618--374659	21	2.0	21	95	0	75	23	21	28	26	1.99
374688--374727	20	1.9	21	85	10	55	37	37	10	15	1.80
375871--375918	19	2.5	20	82	3	62	52	6	12	29	1.63
377137--377196	29	2.0	31	90	6	97	35	6	16	41	1.75
377395--377436	21	2.0	21	95	0	75	23	21	28	26	1.99
377465--377504	20	1.9	21	85	10	55	37	37	10	15	1.80
377719--377788	34	2.1	32	86	5	95	31	15	30	22	1.95
383497--384161	113	5.9	113	87	2	937	37	15	19	27	1.92
384464--384516	3	19.0	3	78	21	53	28	0	1	69	0.99
384464--384516	13	4.2	13	73	21	51	28	0	1	69	0.99
386323--386364	2	22.0	2	90	9	70	50	0	0	50	1.00
388609--388660	24	2.2	24	100	0	104	30	3	44	21	1.70
391527--391551	9	2.8	9	100	0	50	80	0	0	20	0.72
391594--391693	38	2.6	39	77	14	109	60	6	5	29	1.42
392139--392175	2	18.5	2	100	0	74	51	0	0	48	1.00
392179--392221	18	2.5	17	85	7	61	67	2	4	25	1.22
393512--394043	106	5.0	106	94	0	911	20	18	25	35	1.95
394660--394744	37	2.3	37	81	4	91	42	15	17	24	1.88
395416--395451	18	2.0	18	94	0	63	41	33	8	16	1.78
396527--396564	11	3.7	10	83	16	51	0	13	7	78	0.94
396515--396571	16	3.3	16	77	17	69	0	14	7	78	0.94
396515--396571	18	3.2	18	76	18	73	0	14	7	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396545--396577	16	2.1	16	88	5	50	3	15	3	78	0.99
400027--400058	10	3.2	10	90	0	55	78	0	3	18	0.89
401125--401200	38	2.0	40	84	10	104	57	7	3	30	1.45
401660--401702	18	2.5	17	85	7	61	67	2	4	25	1.22
402769--404223	482	3.0	485	94	1	2569	22	27	25	24	2.00
412215--412299	33	2.6	32	81	7	91	42	23	12	21	1.87
412225--412299	16	4.6	16	70	3	60	41	22	13	22	1.89
412490--412528	20	2.0	20	89	0	60	56	0	0	43	0.99
413531--413571	17	2.3	18	91	4	66	31	4	0	63	1.15
421853--421927	38	2.0	38	97	0	141	45	18	9	26	1.80

Tables:   1   2   3   4   5