genome.fa.s8110.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008110.1 Hibiscus syriacus cultivar Beakdansim tig00110646_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  844371

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789676--789795	31	4.0	30	82	9	113	61	3	0	34	1.18
789663--789770	26	4.0	26	78	15	119	61	2	0	36	1.11
789663--790073	30	14.0	29	77	7	244	54	1	5	37	1.34
789909--789969	32	1.9	32	86	0	86	57	1	4	36	1.30
789704--790073	62	6.2	58	73	10	226	54	1	6	37	1.36
790599--790636	20	1.9	20	89	10	60	18	13	7	60	1.56
794661--794698	20	1.9	20	88	0	58	21	26	10	42	1.85
794911--794935	12	2.1	12	100	0	50	52	0	0	48	1.00
794893--794967	33	2.3	34	80	15	86	52	2	2	42	1.29
794986--795020	14	2.7	13	91	8	54	54	0	0	45	0.99
799512--799584	30	2.4	30	83	0	101	31	21	19	27	1.97
804569--804641	30	2.4	30	93	0	119	31	24	19	24	1.98
804572--804668	30	3.2	30	88	1	113	34	24	18	22	1.96
804614--804691	31	2.5	31	83	2	86	34	23	17	24	1.96
809808--809856	19	2.6	19	96	0	89	20	28	28	22	1.98
811929--811976	9	5.0	9	76	14	51	12	18	31	37	1.88
811984--812061	13	6.2	13	77	16	69	16	46	21	15	1.84
811998--812056	18	3.3	18	97	0	109	16	49	22	11	1.78
812054--812092	7	5.4	7	87	6	60	15	30	28	25	1.96
812051--812090	15	2.7	15	92	3	64	17	30	27	25	1.97
813402--813436	18	2.0	18	88	5	54	51	0	17	31	1.45
814562--814670	24	4.5	24	72	4	85	21	15	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814831--814865	2	17.5	2	100	0	70	48	0	0	51	1.00
816837--816911	13	5.2	13	79	17	69	16	45	21	17	1.85
816815--816890	18	4.6	18	79	15	92	18	50	19	11	1.78
816819--816896	31	2.5	31	91	2	131	17	47	20	14	1.82
816888--816926	7	5.4	7	93	6	69	12	33	28	25	1.93
816872--816926	15	3.9	15	90	6	80	14	36	27	21	1.93
818235--818270	18	2.0	18	88	0	54	52	0	16	30	1.44
819398--819506	24	4.5	24	72	4	85	21	15	16	46	1.83
819667--819691	2	12.5	2	100	0	50	48	0	0	52	1.00
823449--823481	17	1.9	17	88	11	50	24	3	0	72	0.98
825426--825485	23	2.7	24	82	12	74	48	3	6	41	1.46
825441--825486	23	2.0	23	95	0	83	45	2	8	43	1.47
825447--825502	23	2.4	23	81	0	58	46	3	8	41	1.52
826265--826308	23	2.0	23	86	4	63	56	2	13	27	1.49
826330--826438	29	3.7	29	72	13	89	55	9	13	21	1.65
827887--828084	3	68.3	3	88	6	302	64	2	0	33	1.05
828502--828606	40	2.6	41	80	6	115	23	20	33	22	1.97
828269--828603	135	2.5	132	85	6	437	23	19	31	25	1.98
828711--828771	32	1.9	31	84	15	81	39	14	14	31	1.87
830954--831155	40	5.1	40	96	0	368	24	17	26	32	1.97
832146--832216	26	2.6	26	77	6	79	46	11	15	26	1.79
832430--832528	36	2.8	36	88	0	135	40	10	22	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832606--832683	35	2.2	37	81	4	88	41	12	19	26	1.87
832838--832906	33	2.1	33	91	0	111	28	21	15	33	1.95
833936--834045	14	7.8	14	75	17	79	1	12	8	77	1.07
833929--834099	29	5.8	28	71	18	107	1	14	8	76	1.08
834026--834079	17	3.2	17	80	17	67	0	14	7	77	0.97
833970--834099	46	2.8	47	82	11	144	1	14	8	75	1.11
833980--834075	20	4.8	20	69	22	67	1	14	8	76	1.07
833987--834099	25	5.0	23	74	19	96	0	14	8	76	1.07
837664--837782	30	4.0	29	77	6	94	57	11	11	18	1.63
839161--839214	3	19.0	3	74	11	51	64	1	0	33	1.04
840190--840234	21	2.2	21	96	4	83	31	11	24	33	1.90

Tables:   1   2   3   4   5

The End!