genome.fa.s8114.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008114.1 Hibiscus syriacus cultivar Beakdansim tig00110653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  335373

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235897--236254	178	2.0	179	97	0	673	28	8	10	51	1.66
237183--237325	71	2.0	71	95	0	259	38	9	13	38	1.78
237651--237721	24	2.9	25	87	2	99	28	22	23	25	2.00
237864--237920	15	3.9	15	81	2	62	38	17	7	36	1.77
239911--239985	3	26.0	3	81	12	95	34	0	0	65	0.93
241427--241707	144	2.0	145	81	9	335	39	6	6	48	1.53
241487--241765	144	1.9	146	82	7	354	41	5	6	46	1.53
247318--247547	113	2.0	116	95	4	423	37	15	16	30	1.90
247888--248103	108	2.0	108	96	1	398	38	15	24	22	1.92
250373--250533	64	2.5	64	81	6	175	34	17	23	24	1.96
254492--254629	64	2.2	65	86	2	190	34	18	23	24	1.96
254637--254674	20	1.9	20	94	0	67	34	21	21	23	1.97
259998--260035	18	2.1	18	90	0	58	28	7	5	57	1.49
260660--260744	22	3.9	22	87	3	109	38	14	14	32	1.86
261257--261325	20	3.6	19	66	16	52	43	10	23	23	1.84
261384--261448	20	3.3	20	66	20	55	41	10	24	23	1.86
261125--261978	123	6.9	123	86	4	1066	40	14	19	25	1.90
262174--262273	3	34.0	3	85	11	100	39	0	0	61	0.96
263637--263666	3	10.0	3	100	0	60	33	0	0	66	0.92
263795--264075	154	1.8	151	87	5	422	39	4	6	49	1.49
265363--265399	18	2.1	18	100	0	74	32	0	24	43	1.55
269548--269590	23	1.9	22	86	13	61	65	2	9	23	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287111--287155	21	2.1	21	87	0	63	31	28	24	15	1.96
287956--288204	31	8.0	31	96	0	446	20	19	22	38	1.94
293654--293715	22	3.0	21	68	15	56	24	20	20	33	1.97
293857--293944	20	4.4	20	91	2	117	26	13	22	37	1.91
293857--293954	40	2.5	40	86	6	128	23	15	23	37	1.93
298752--298802	27	2.0	26	84	7	68	54	0	5	39	1.24
299200--299224	11	2.3	11	100	0	50	28	28	20	24	1.99
299587--299628	10	4.4	10	84	3	52	33	2	2	61	1.21
301982--302013	16	2.1	15	94	5	55	0	9	0	90	0.45
301984--302013	10	2.9	10	95	5	51	0	10	0	90	0.47
303395--303453	16	3.7	16	71	13	50	42	33	13	10	1.78
304159--304268	46	2.4	45	83	1	148	45	24	12	17	1.83
304288--304378	32	2.8	32	85	3	121	38	27	10	23	1.88
304706--304737	15	2.1	15	94	0	55	65	12	3	18	1.38
304779--304855	33	2.4	32	89	4	127	44	15	9	31	1.78
304844--304885	21	2.0	21	95	0	75	47	7	14	30	1.71
314210--314678	114	4.2	113	88	1	674	30	12	11	44	1.78
314641--314682	21	2.2	19	87	12	59	40	9	9	40	1.70
314762--315001	73	3.3	71	87	4	345	36	10	11	40	1.77
315214--315297	23	3.7	23	90	0	141	30	20	13	35	1.90
315214--315309	46	2.1	46	90	0	147	32	17	12	37	1.87
315068--315449	204	1.9	204	89	1	595	34	13	10	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315408--315458	23	2.2	23	85	0	66	33	21	5	39	1.78
315418--315467	23	2.2	23	88	0	73	34	18	8	40	1.79
315260--315644	158	2.4	158	89	0	592	33	13	10	42	1.79
315575--315619	23	2.0	23	90	0	72	40	20	6	33	1.78
317934--318015	6	13.8	6	87	7	107	34	0	65	0	0.93
317931--318010	25	3.3	25	91	3	119	36	0	63	0	0.94
318032--318064	17	1.9	17	93	0	57	21	3	0	75	0.93
321883--321929	23	2.1	23	84	4	60	36	12	17	34	1.87
322340--322412	23	3.2	23	88	0	101	41	21	2	34	1.68
321996--323038	425	2.5	427	96	2	1933	38	12	7	41	1.70
322765--322837	23	3.2	23	88	0	101	41	21	2	34	1.68
325706--326196	183	2.7	183	95	1	882	33	16	15	34	1.90
327215--327383	88	1.9	91	96	3	317	29	18	17	34	1.94
327847--327924	3	26.0	3	74	0	66	23	34	6	35	1.80
327851--327936	12	6.9	12	79	7	91	20	34	8	36	1.83
327847--327936	18	4.8	18	76	8	81	22	34	7	35	1.83
327860--327936	36	2.1	36	90	0	118	20	35	9	35	1.85
327851--327939	6	14.3	6	74	6	61	20	34	7	37	1.82
329393--330904	194	7.8	197	96	3	2782	31	16	15	36	1.90
331010--331058	19	2.6	19	93	0	80	57	10	2	30	1.43
332836--332901	33	2.0	33	90	0	105	22	48	0	28	1.51
332935--332999	21	3.1	21	80	6	69	15	29	15	40	1.88

Tables:   1   2

The End!