genome.fa.s8116.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008116.1 Hibiscus syriacus cultivar Beakdansim tig00110655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  363508

Tables:   1   2   

This is table  2  of  2  ( 193 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236872--236929	18	2.9	19	83	16	82	46	0	5	48	1.24
236874--236937	21	3.2	19	85	14	85	45	1	4	48	1.32
237430--237521	15	6.3	15	91	5	152	52	0	0	47	1.00
237430--237564	43	2.9	45	86	13	170	48	0	2	49	1.13
237430--237514	28	3.0	28	94	3	143	50	0	0	49	1.00
237507--237608	22	4.5	22	71	18	93	39	0	9	50	1.35
237430--237560	15	8.5	15	80	15	151	48	0	2	49	1.13
237544--237692	31	5.4	31	71	28	156	36	0	12	51	1.39
237544--237820	53	5.1	53	83	14	361	33	0	13	52	1.41
237620--237663	21	2.1	21	95	0	79	36	0	13	50	1.42
237544--237883	106	3.1	107	88	9	421	33	0	14	52	1.42
237694--237846	26	5.6	25	73	19	103	29	0	16	53	1.44
237720--237911	32	7.0	29	73	23	150	33	0	14	52	1.42
237641--237911	111	2.5	108	85	9	277	32	0	14	52	1.42
237929--237987	31	1.9	31	92	0	100	42	10	6	40	1.65
239027--239068	2	21.0	2	100	0	84	50	0	0	50	1.00
242483--242560	41	1.9	41	100	0	156	46	17	5	30	1.70
242961--243008	19	2.5	20	89	3	71	39	2	12	45	1.54
242961--243008	10	4.9	10	79	5	53	39	2	12	45	1.54
243185--243240	20	2.8	20	72	8	60	39	14	12	33	1.83
244916--244959	7	6.0	7	81	7	52	31	31	0	36	1.58
244911--244957	15	3.2	15	84	3	69	34	36	0	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245253--245286	14	2.3	15	90	5	52	23	8	5	61	1.47
245207--245305	44	2.2	45	78	8	105	24	12	5	58	1.53
246819--246857	14	2.7	15	88	11	55	25	0	28	46	1.53
258733--258824	25	3.5	26	68	25	77	42	0	14	43	1.45
258732--258831	53	1.9	52	91	6	166	44	0	13	43	1.43
263080--263122	22	2.0	22	95	0	77	30	23	18	27	1.98
263082--263129	22	2.2	22	88	0	69	31	25	20	22	1.98
271153--271178	2	13.0	2	100	0	52	50	0	0	50	1.00
274082--274159	31	2.5	31	91	4	122	20	11	14	53	1.71
275461--275538	31	2.5	31	91	0	129	55	15	10	19	1.68
282672--282701	12	2.5	12	88	0	51	40	0	6	53	1.27
284185--284221	18	2.1	18	89	0	56	37	0	2	59	1.12
284841--284917	32	2.4	32	80	8	86	31	16	15	36	1.91
288161--288216	22	2.5	22	94	0	94	21	28	25	25	1.99
290233--290767	262	2.0	263	90	2	853	40	15	11	32	1.83
291478--291525	17	2.8	17	72	12	53	60	2	0	37	1.09
301296--301350	26	2.1	26	100	0	110	27	0	36	36	1.57
301575--301602	13	2.2	13	100	0	56	39	0	32	28	1.57
311536--311595	28	2.1	29	84	9	79	25	0	1	73	0.93
311511--311668	68	2.3	69	81	10	187	24	5	1	67	1.22
311891--311921	15	2.1	15	93	0	53	6	9	3	80	0.99
312028--312216	4	47.8	4	67	22	82	20	5	1	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311987--312243	14	18.8	14	68	21	127	20	5	1	72	1.13
311990--312066	26	2.8	27	79	14	70	20	2	2	74	1.07
312032--312243	18	11.1	18	68	25	100	19	5	1	73	1.11
311953--312245	133	2.2	136	76	16	292	21	5	2	70	1.17
312139--312344	29	7.3	29	68	22	75	18	7	0	73	1.12
312136--312183	11	4.4	10	82	12	51	27	0	0	72	0.84
312020--312329	22	13.9	23	68	21	114	18	7	1	72	1.15
312000--312271	8	32.0	8	67	17	70	20	5	1	72	1.12
312143--312337	85	2.3	83	80	10	218	18	7	0	73	1.08
312132--312274	14	10.5	13	71	18	55	20	5	0	74	1.02
312139--312265	49	2.6	49	81	15	133	20	4	0	74	0.99
312191--312330	56	2.5	54	78	18	144	15	9	0	74	1.11
313064--313145	40	2.0	40	84	9	105	40	0	2	57	1.12
319561--319649	32	2.9	31	88	5	126	31	23	21	23	1.98
325153--325217	33	2.0	33	93	0	112	40	26	23	10	1.87
327300--327339	20	2.0	20	90	4	64	42	27	10	20	1.83
327410--327440	12	2.6	12	100	0	62	48	35	9	6	1.62
328919--328953	17	2.1	17	94	0	61	25	17	22	34	1.96
336503--336544	18	2.4	17	77	14	50	59	2	2	35	1.23
336588--336651	25	2.6	25	78	7	60	50	0	6	43	1.27
340681--340729	19	2.6	19	96	0	89	20	28	6	44	1.75
346007--346040	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347264--347324	3	21.0	3	83	12	83	31	1	0	67	1.01
347402--347600	25	7.9	25	97	1	371	32	20	16	31	1.94
349528--349561	15	2.2	16	89	5	52	17	0	5	76	0.98
362673--362724	3	18.0	3	78	21	58	30	1	0	67	1.02
362677--362722	22	2.0	23	87	4	67	30	2	0	67	1.03
362798--362965	25	6.9	25	90	10	276	32	20	15	31	1.94
363270--363327	30	1.9	30	82	6	73	70	6	18	3	1.24

Tables:   1   2

The End!