Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008127.1 Hibiscus syriacus cultivar Beakdansim tig00110682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110226

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7064--7115
6
9.3
6
87
8
67
82
0
17
0
0.66
7055--7115
15
4.1
15
73
25
58
80
0
19
0
0.72
7053--7115
11
5.6
11
85
9
83
79
0
20
0
0.73
8338--8975
83
7.6
83
91
3
998
25
12
23
37
1.91
8338--8975
163
3.8
165
93
3
1039
25
12
23
37
1.91
8338--8975
246
2.5
248
91
3
1012
25
12
23
37
1.91
8814--8991
92
1.9
92
88
2
268
28
12
22
35
1.91
9700--10157
116
4.0
114
83
5
532
36
12
19
30
1.90
10074--10300
124
1.8
124
87
0
339
42
14
17
25
1.87
10076--10358
124
2.3
122
80
3
282
43
16
17
22
1.88
10510--10583
3
24.0
3
80
5
85
40
0
0
59
0.97
12069--12114
22
2.1
22
84
11
60
54
4
0
41
1.20
13078--13110
16
2.1
16
100
0
66
12
12
48
27
1.76
15161--15199
17
2.4
17
91
4
62
43
0
2
53
1.14
15154--15238
39
2.2
36
80
10
89
45
0
3
50
1.18
15474--15504
10
3.1
10
95
0
53
87
0
3
9
0.66
15715--15746
17
1.9
17
93
6
57
28
0
15
56
1.40
17942--18020
3
26.3
3
94
0
140
35
1
0
63
1.03
18147--18187
16
2.6
16
88
11
66
7
58
17
17
1.60
19355--19401
17
2.9
16
75
6
51
38
0
0
61
0.96
30539--30593
11
5.4
11
77
18
57
81
0
14
3
0.82
30540--30593
21
2.7
20
81
16
67
83
0
12
3
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31733--32207
83
5.7
83
95
0
853
27
12
21
38
1.90
32927--33485
112
5.0
112
92
4
859
38
15
19
26
1.92
33798--33868
3
25.0
3
73
21
64
36
1
0
61
1.05
33798--33866
10
6.7
10
74
21
54
36
1
0
62
1.04
33798--33869
15
4.4
17
77
19
82
37
1
0
61
1.05
33826--33916
33
2.8
32
80
8
96
48
3
0
48
1.18
39919--39963
23
2.0
23
86
0
63
26
28
24
20
1.99
39942--40245
149
2.0
149
97
0
572
34
20
17
27
1.95
41854--41898
21
2.1
21
91
0
72
15
22
28
33
1.95
44952--44996
23
2.0
23
86
0
63
26
28
24
20
1.99
44975--45278
149
2.0
149
97
0
572
34
20
17
27
1.95
46868--46912
21
2.1
21
87
0
63
15
24
28
31
1.96
48204--48287
34
2.5
32
81
12
89
64
13
0
22
1.28
50430--50484
18
3.1
18
77
12
51
58
0
1
40
1.09
60008--60055
19
2.6
18
73
3
51
72
4
12
10
1.24
60570--60613
20
2.2
20
92
4
72
27
6
31
34
1.83
62352--62615
106
2.5
106
89
0
393
22
18
25
32
1.97
63101--63127
14
1.9
14
100
0
54
22
14
22
40
1.90
63734--63783
24
2.1
24
88
7
75
0
16
2
82
0.77
63737--63785
8
6.1
8
81
9
64
0
14
2
83
0.73
63728--63786
9
6.6
9
80
5
57
0
15
1
83
0.74
74236--74292
19
3.1
18
73
14
53
68
3
15
12
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74665--74702
18
2.1
18
85
9
51
57
2
0
39
1.12
74698--74733
17
2.1
17
89
0
54
75
0
0
25
0.81
76801--76871
29
2.4
29
97
0
133
22
26
36
14
1.92
80122--80167
23
2.0
23
91
0
74
39
8
19
32
1.82
80301--80956
199
3.3
199
82
5
796
30
14
14
40
1.87
81119--81148
14
2.1
14
100
0
60
46
20
6
26
1.75
85080--86249
200
5.8
200
91
1
1810
31
15
13
40
1.86
86629--86679
24
2.1
24
85
0
66
47
19
3
29
1.68
87974--88032
3
19.7
3
82
0
64
27
30
5
37
1.78
87983--88032
18
2.8
18
90
0
73
24
32
6
38
1.79
89508--90650
400
2.9
395
85
2
1563
32
15
13
37
1.87
89508--90666
199
5.8
198
84
2
1417
32
15
13
37
1.87
92147--92185
18
2.2
18
100
0
78
0
43
0
56
0.99
92370--92436
33
2.0
33
94
0
116
23
47
1
26
1.60
92470--92513
21
2.1
21
91
0
70
15
31
11
40
1.83
92596--92628
15
2.2
15
100
0
66
12
63
6
18
1.48
94798--95652
182
4.7
182
89
1
1241
26
16
14
42
1.87
96254--96360
51
2.1
51
92
0
178
45
0
4
48
1.29
107645--107732
29
3.0
29
76
6
88
36
1
6
55
1.34

Tables:   1

The End!