genome.fa.s8130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008130.1 Hibiscus syriacus cultivar Beakdansim tig00110685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92413

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1966--2034	33	2.1	33	83	5	86	30	36	1	31	1.67
2434--2480	14	3.1	15	75	12	51	72	6	19	2	1.17
5488--5537	20	2.6	19	87	6	66	34	16	6	44	1.72
9405--9451	19	2.5	19	92	0	76	44	6	14	34	1.71
12446--12521	35	2.1	37	87	4	111	30	35	3	30	1.76
16040--16180	36	3.9	36	88	0	201	28	37	4	29	1.76
18959--19140	90	2.0	91	90	1	285	21	27	23	26	1.99
23314--23495	90	2.0	91	88	1	267	22	26	23	27	1.99
31985--32021	18	2.0	19	89	5	58	0	16	5	78	0.93
36230--36278	8	6.1	8	100	0	98	75	0	24	0	0.80
36230--36288	24	2.5	24	91	5	84	76	0	23	0	0.79
39615--39668	21	2.7	21	88	5	76	33	12	7	46	1.70
42657--42693	15	2.5	15	95	0	65	8	18	67	5	1.36
48301--48330	14	2.2	13	94	5	51	0	20	0	80	0.72
50563--50614	19	2.6	21	90	6	81	46	7	13	32	1.72
54652--54703	19	2.6	21	90	6	81	46	7	13	32	1.72
58740--58791	19	2.6	21	90	6	81	46	7	13	32	1.72
59598--59634	17	2.1	18	90	5	58	37	5	18	37	1.74
62827--62878	19	2.6	21	90	6	81	46	7	13	32	1.72
66355--66401	19	2.6	18	77	12	51	63	0	14	21	1.30
66810--66865	19	2.8	20	86	5	78	39	7	14	39	1.73
67662--67721	30	2.0	31	83	3	77	56	8	8	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70457--70503	19	2.6	18	77	12	51	63	0	14	21	1.30
70912--70987	20	3.8	20	87	3	109	40	6	14	38	1.72
71892--71951	30	2.0	31	83	3	77	55	10	8	26	1.61
77560--77602	9	4.8	9	86	8	61	2	18	2	76	1.00
79838--80432	93	6.5	93	78	6	579	35	18	9	36	1.84
79889--80413	177	2.9	180	82	6	568	35	18	10	36	1.85
80427--81080	93	7.1	91	73	10	325	35	11	16	36	1.85
80500--80960	177	2.6	177	79	6	453	36	11	16	36	1.84
80656--81000	177	1.9	176	82	5	419	36	13	15	35	1.86
81110--81992	439	2.0	439	100	0	1766	37	9	16	37	1.80
81936--82580	93	6.9	93	82	2	616	36	15	12	35	1.85
81991--82580	279	2.1	279	81	1	682	35	16	12	34	1.87
82726--83148	93	4.6	93	73	6	329	35	16	11	36	1.84
83246--83732	93	5.2	93	82	3	548	35	10	18	36	1.84
83747--83945	92	2.2	93	83	0	247	38	17	10	34	1.83
83927--84148	110	2.0	109	83	0	273	38	15	10	35	1.83
84037--84272	89	2.6	89	82	10	275	38	15	9	36	1.80
84464--84997	105	5.5	94	79	8	330	37	17	9	35	1.82
84581--84843	105	2.5	105	93	0	445	39	17	8	34	1.81
84791--85000	92	2.3	92	85	5	271	37	15	10	36	1.81
84984--85009	13	2.0	13	100	0	52	38	0	15	46	1.46
85074--85283	93	2.3	92	78	2	215	36	18	9	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85351--85387	17	2.2	17	95	0	65	45	10	16	27	1.80
85368--85671	93	3.3	91	77	7	285	34	17	11	36	1.86
85810--86019	93	2.3	92	78	4	215	38	15	11	34	1.84

Tables:   1

The End!