genome.fa.s8131.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008131.1 Hibiscus syriacus cultivar Beakdansim tig00110686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  310772

Tables:   1   2   

This is table  2  of  2  ( 169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225110--225139	13	2.3	13	94	0	51	13	20	46	20	1.83
227310--227360	24	2.2	23	82	10	59	45	19	11	23	1.83
227327--227441	24	4.8	24	82	6	144	39	18	15	26	1.91
227327--227437	48	2.3	47	87	1	159	38	18	15	27	1.91
227357--227459	48	2.1	48	82	7	120	41	17	14	26	1.88
229092--229158	27	2.5	27	80	0	71	28	14	10	46	1.78
229830--229902	8	9.5	8	71	24	52	20	24	38	16	1.93
229864--229919	13	4.3	13	97	0	103	14	19	48	17	1.81
232042--232141	24	4.2	24	88	2	85	44	20	12	24	1.85
232059--232150	24	3.8	24	92	0	130	41	19	14	25	1.89
232060--232168	24	4.5	24	88	2	94	43	19	12	24	1.86
232060--232173	48	2.4	48	82	4	124	44	18	12	24	1.84
233710--233809	24	4.2	24	89	2	94	43	20	13	24	1.86
233727--233814	24	3.7	24	93	0	131	39	20	14	25	1.90
233728--233842	48	2.4	48	82	2	124	44	18	12	25	1.84
236326--236375	18	2.8	18	96	0	91	8	22	52	18	1.71
238552--238656	24	4.4	24	85	4	95	40	20	15	24	1.91
238565--238663	24	4.1	24	88	5	146	39	19	16	25	1.91
238579--238681	48	2.1	48	84	7	129	42	17	14	25	1.87
242447--242522	24	3.2	24	86	3	82	44	19	13	22	1.85
242464--242579	24	4.8	24	87	4	162	39	18	15	25	1.91
245035--245069	8	4.5	8	89	3	54	22	22	37	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247244--247319	24	3.2	24	86	3	82	44	19	13	22	1.85
247261--247400	24	5.8	24	88	3	176	39	17	15	27	1.90
247321--247377	12	4.8	12	75	14	55	38	15	14	31	1.87
247261--247418	48	3.3	47	77	10	158	40	17	15	26	1.89
247778--247811	15	2.1	16	89	10	52	23	26	35	14	1.94
247768--247821	27	2.0	28	82	17	69	22	24	35	18	1.96
247801--247832	13	2.5	13	94	0	55	12	21	46	18	1.82
247768--247814	10	5.5	8	82	14	51	21	25	34	19	1.96
247795--247854	18	3.2	18	83	7	75	15	20	46	18	1.84
250050--250085	17	2.2	17	90	5	56	72	2	19	5	1.17
256772--257092	21	15.6	21	70	11	138	32	20	23	23	1.98
257101--257175	21	3.6	21	81	3	89	22	21	26	29	1.99
256786--257118	41	8.1	41	94	1	553	32	19	23	24	1.98
257164--257238	20	3.8	20	100	0	150	24	20	16	40	1.91
257355--257534	41	4.4	41	97	1	326	24	23	18	33	1.96
257359--257513	20	7.6	20	78	15	174	23	23	18	34	1.96
257359--257554	21	9.6	20	76	11	166	23	23	19	33	1.97
257791--257823	16	2.1	16	88	5	50	45	9	6	39	1.61
258162--258198	17	2.2	17	86	13	51	37	8	0	54	1.30
262172--262231	32	1.9	31	82	3	75	31	30	16	21	1.96
262272--262340	32	2.2	32	83	0	84	40	30	10	18	1.84
275802--275826	8	3.1	8	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288350--288381	12	2.7	12	100	0	64	62	0	12	25	1.30
289736--289792	23	2.5	24	88	5	82	8	1	40	49	1.44
289759--289849	28	3.2	27	82	4	110	7	4	37	50	1.51
289815--289873	23	2.5	24	81	8	68	5	5	42	47	1.47
304530--304781	136	1.9	136	84	5	348	28	20	14	36	1.92

Tables:   1   2

The End!