genome.fa.s8132.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008132.1 Hibiscus syriacus cultivar Beakdansim tig00110687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  357788

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285608--285686	20	3.7	22	80	12	85	25	35	17	21	1.95
285608--285667	23	2.8	21	87	10	77	23	38	16	21	1.93
289609--289749	17	8.1	17	75	7	86	43	7	14	35	1.72
303323--303375	2	26.5	2	100	0	106	50	0	0	49	1.00
303536--303642	24	4.5	24	71	0	79	49	14	14	21	1.79
309025--309108	16	5.3	15	69	8	60	58	4	9	27	1.50
309038--309093	8	7.1	8	75	4	60	53	3	10	32	1.53
309013--309113	31	3.1	32	92	7	168	56	4	9	28	1.53
309762--309808	17	2.8	17	80	0	58	53	2	0	44	1.12
309861--309896	18	1.9	19	88	5	56	38	0	0	61	0.96
310058--310119	28	2.2	28	83	11	74	62	4	3	29	1.31
311383--311457	3	25.0	3	83	5	98	60	0	1	38	1.06
311593--311889	124	2.5	121	85	8	390	24	17	15	42	1.88
311797--312445	113	5.8	112	86	5	798	30	18	13	38	1.88
311797--312578	226	3.6	224	83	8	890	30	18	13	37	1.89
313310--313649	93	3.7	93	93	0	547	36	22	14	27	1.93
314635--314686	12	4.6	11	81	18	63	5	9	0	84	0.77
314635--314678	11	3.7	12	84	9	54	4	9	0	86	0.70
314642--314686	21	2.1	22	92	8	76	4	8	0	86	0.69
314638--314689	20	2.5	20	84	9	70	5	9	0	84	0.77
322024--322055	15	2.1	15	94	0	55	46	6	18	28	1.73
325761--325807	14	3.0	16	78	15	53	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325760--325808	15	3.2	15	78	13	55	51	2	0	46	1.12
326005--326066	28	2.2	28	83	11	74	62	4	3	29	1.31
327209--327276	3	22.0	3	84	3	82	58	0	1	39	1.07
327417--327708	124	2.4	121	86	6	378	22	17	16	42	1.89
327867--327917	16	3.1	16	71	15	50	23	17	9	49	1.77
327629--328257	113	5.7	113	85	7	765	30	18	13	37	1.89
329114--329453	93	3.7	93	93	0	545	36	21	14	27	1.92
341731--341766	18	1.9	19	88	5	56	38	0	0	61	0.96
343276--343347	3	24.0	3	83	5	92	59	0	1	38	1.06
345440--345505	12	5.6	12	87	3	89	10	15	48	25	1.77
345440--345505	23	2.8	24	83	4	89	10	15	48	25	1.77
345598--345641	13	3.5	13	93	3	72	13	15	52	18	1.75
345664--345692	6	4.8	6	100	0	58	0	65	17	17	1.27
345710--345734	6	4.2	6	100	0	50	0	64	16	20	1.30
347462--347506	17	2.6	17	76	13	56	31	6	17	44	1.75
347909--347941	15	2.2	15	100	0	66	42	21	6	30	1.77
349158--349255	18	5.5	18	77	16	87	66	2	10	21	1.32
349160--349263	53	2.0	52	84	1	136	65	1	9	23	1.32
350907--350936	5	5.8	5	96	4	51	80	3	0	16	0.85
350951--350987	17	2.2	17	90	9	58	2	16	0	81	0.81
350960--351016	30	1.9	30	89	7	89	5	17	0	77	0.95
352211--352307	44	2.2	44	88	0	140	39	17	18	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352298--352342	19	2.4	19	100	0	90	31	17	28	22	1.97
352251--352409	83	1.9	82	79	6	178	34	18	23	23	1.96
354009--354066	23	2.5	23	91	0	98	17	27	25	29	1.97
357500--357553	20	2.4	23	85	11	69	31	16	24	27	1.96

Tables:   1   2

The End!