genome.fa.s8137.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008137.1 Hibiscus syriacus cultivar Beakdansim tig00110692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  382795

Tables:   1   2   

This is table  2  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251198--251252	20	2.8	20	97	0	101	25	18	29	27	1.98
251828--251946	42	2.9	41	77	3	114	31	22	22	23	1.99
251218--253669	465	5.3	464	84	2	3208	34	16	16	32	1.92
250696--253669	232	12.7	232	84	4	3677	34	17	16	31	1.92
253472--253574	42	2.5	41	82	1	125	30	19	23	27	1.98
255353--255448	17	5.8	16	82	15	99	4	10	1	84	0.81
255350--255447	1	98.0	1	71	0	70	4	9	1	85	0.76
260008--260068	29	2.1	29	87	0	86	24	21	6	47	1.74
260037--260193	81	1.9	81	91	5	255	26	24	13	36	1.92
260456--260967	59	8.7	59	91	3	793	38	20	10	31	1.86
265229--265281	2	26.5	2	96	0	97	50	0	0	49	1.00
265554--265766	68	3.1	68	88	0	318	30	24	15	29	1.95
269574--269684	54	2.1	54	98	0	213	30	20	16	32	1.95
270346--270384	13	2.8	13	88	7	51	66	0	2	30	1.05
272263--272291	15	1.9	15	100	0	58	6	17	0	75	1.01
272483--273112	260	2.4	260	88	1	940	34	16	14	34	1.90
272886--272986	42	2.4	41	77	6	105	29	22	22	24	1.99
274787--274870	6	14.8	6	78	20	76	1	15	0	83	0.71
274787--274870	11	7.5	11	80	18	93	1	15	0	83	0.71
274792--274872	15	5.5	15	81	16	82	1	16	0	82	0.73
274790--274866	26	2.9	27	83	11	97	1	14	0	84	0.69
275746--275799	17	3.2	17	75	15	58	74	0	3	22	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275735--275855	33	3.5	34	73	17	99	66	0	5	26	1.19
275811--275856	21	2.1	21	84	8	56	65	2	4	28	1.23
275968--276013	2	23.5	2	95	4	85	52	0	0	47	1.00
277210--277296	34	2.5	35	87	9	115	32	8	17	42	1.78
277367--277422	29	1.9	29	82	7	69	32	14	17	35	1.90
277440--277477	15	2.5	15	86	0	58	42	18	21	18	1.90
277468--277654	102	1.8	102	85	4	261	40	13	18	27	1.88
278653--278766	31	3.6	31	79	2	120	36	21	12	29	1.90
283014--283039	11	2.4	11	100	0	52	84	0	0	15	0.62
283102--283143	16	2.6	16	84	3	57	78	0	7	14	0.95
283174--283262	37	2.5	35	77	12	92	70	3	4	21	1.19
283239--283284	16	2.8	16	86	3	56	76	0	4	19	0.96
283253--283298	21	2.2	21	88	7	67	71	0	4	23	1.03
283239--283288	9	5.3	9	76	23	50	76	0	4	20	0.95
283168--283298	16	8.4	16	66	19	55	70	3	4	22	1.20
283267--283351	37	2.3	37	82	9	95	64	2	4	28	1.26
283375--283418	2	23.0	2	82	17	58	50	0	2	47	1.13
283375--283422	19	2.6	19	87	9	64	52	0	2	45	1.12
289478--289514	19	2.0	19	89	5	58	67	0	8	24	1.17
292886--292944	25	2.4	25	100	0	118	35	11	10	42	1.76
294632--294681	2	25.5	2	95	4	93	50	0	0	50	1.00
297294--298304	504	2.0	505	98	1	1942	36	20	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298105--298567	228	2.0	234	97	2	875	41	19	11	27	1.85
302385--302463	34	2.4	34	83	8	92	41	0	1	56	1.07
304210--304281	21	3.4	21	88	7	110	18	31	26	23	1.97
304804--304910	34	3.1	34	89	0	169	52	5	4	37	1.46
305333--305872	127	4.3	127	92	0	866	32	20	23	22	1.98
306606--306632	13	2.1	13	100	0	54	44	14	33	7	1.73
316747--316788	18	2.3	18	87	0	57	40	9	19	30	1.83
316996--317027	13	2.5	13	94	0	55	21	21	9	46	1.79
318410--318470	21	3.0	21	71	20	56	73	0	18	8	1.07
318430--318491	25	2.6	23	76	19	63	72	1	19	6	1.15
319168--319230	28	2.2	28	88	5	92	42	26	4	25	1.75
320583--320694	53	2.1	54	88	5	165	28	10	12	48	1.74
322078--322595	204	2.5	203	89	4	808	34	18	20	26	1.96
322494--322712	117	1.9	118	90	2	352	38	16	21	22	1.92
322283--323042	321	2.4	320	86	2	1051	35	17	20	26	1.95
324163--324555	59	6.7	59	91	0	633	30	22	11	34	1.90
324780--324837	22	2.7	23	84	10	70	25	22	17	34	1.96
327942--328016	36	2.1	36	97	0	141	28	12	21	38	1.89
339646--339681	5	7.2	5	100	0	72	80	0	0	19	0.71
342113--342142	12	2.5	12	94	0	51	46	0	0	53	1.00
343499--343533	15	2.3	15	95	0	61	0	48	8	42	1.33
345369--345878	59	8.6	59	92	0	842	30	23	11	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350771--350857	29	3.0	29	93	1	147	43	9	13	33	1.76
355537--355623	29	3.0	29	93	1	147	43	9	13	33	1.76
370745--370807	3	21.0	3	100	0	126	66	0	0	33	0.92
377529--377584	24	2.3	24	81	3	67	17	44	10	26	1.82
378581--378610	3	10.0	3	92	0	51	33	3	0	63	1.11
380576--380627	22	2.3	22	83	9	61	15	7	1	75	1.12
381032--381057	6	4.3	6	100	0	52	50	0	0	50	1.00
382301--382345	19	2.4	19	96	3	83	11	11	8	68	1.39

Tables:   1   2

The End!