genome.fa.s8140.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008140.1 Hibiscus syriacus cultivar Beakdansim tig00110698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  511555

Tables:   1   2   3   

This is table  3  of  3  ( 302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440241--440289	15	3.3	15	86	8	73	26	0	0	73	0.83
440344--440421	33	2.4	33	86	4	104	34	16	16	32	1.92
445449--445511	20	2.9	21	79	9	65	15	25	34	23	1.95
454403--454434	16	2.0	16	93	0	55	34	25	28	12	1.92
454445--454651	110	1.9	110	89	0	324	37	22	16	23	1.94
455637--455685	24	2.1	24	85	11	66	34	0	0	65	0.93
455743--455820	33	2.4	33	86	4	104	35	17	15	30	1.91
456178--456217	2	20.0	2	100	0	80	50	0	0	50	1.00
459735--459762	11	2.5	11	100	0	56	21	7	10	60	1.53
460453--460492	21	1.9	21	94	0	71	17	20	17	45	1.86
460448--460500	21	2.5	21	81	0	70	20	22	18	37	1.94
460490--460580	20	4.6	20	90	5	132	40	21	16	20	1.91
460757--460820	22	2.9	22	90	0	101	25	40	14	20	1.89
461171--461290	34	3.4	34	70	15	116	16	18	23	41	1.90
461157--461331	73	2.4	73	90	0	269	16	17	23	43	1.87
461190--461350	40	4.2	40	75	10	147	16	16	22	44	1.87
461211--461350	20	7.3	20	80	9	123	15	15	23	45	1.84
462831--462866	6	6.0	6	100	0	72	16	66	0	16	1.25
463248--463427	20	8.6	20	83	9	216	40	23	18	17	1.91
463271--463439	88	1.9	88	91	2	277	42	23	18	15	1.89
463472--463694	20	11.4	20	83	7	251	21	19	20	38	1.94
463472--463614	56	2.5	54	80	10	160	22	20	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463454--463646	96	2.0	96	93	0	332	20	22	20	36	1.95
464130--464171	21	2.2	19	87	12	59	21	35	19	23	1.96
464124--464231	21	5.2	20	67	16	58	20	35	19	25	1.96
464125--464233	42	2.6	43	79	5	134	20	35	19	24	1.95
465620--465655	14	2.6	14	90	0	54	30	0	22	47	1.52
465761--465855	33	2.8	34	85	3	120	44	18	22	14	1.86
465893--465946	14	3.5	14	73	22	54	11	24	20	44	1.83
465872--465966	33	2.8	33	90	3	136	13	23	20	43	1.87
465938--466071	20	6.7	20	93	1	207	17	21	23	36	1.95
468467--468520	24	2.2	24	93	0	90	40	20	18	20	1.91
468467--468534	24	2.8	24	84	0	64	38	20	17	23	1.93
469362--469468	20	5.3	20	96	0	187	23	19	27	29	1.98
469462--469567	20	5.3	20	94	0	185	20	16	19	42	1.89
469361--469548	60	3.1	60	81	7	170	22	18	23	35	1.95
469455--469567	60	1.9	60	96	0	208	20	17	20	41	1.90
469564--469609	21	2.2	21	92	0	74	39	17	26	17	1.91
469804--470195	136	2.9	137	84	4	461	31	11	12	44	1.78
473527--473580	10	5.6	10	82	4	67	16	24	29	29	1.97
473520--473586	10	7.0	9	80	8	62	14	25	29	29	1.95
473583--473631	9	5.1	9	77	22	55	20	51	24	4	1.65
473583--473631	17	2.8	18	75	12	57	20	51	24	4	1.65
473594--473637	22	2.0	21	95	4	79	18	50	22	9	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473627--473664	7	5.4	7	93	0	67	18	28	26	26	1.98
480844--480893	18	2.8	18	75	9	57	24	52	20	4	1.63
480851--480902	27	2.0	26	88	3	77	21	48	23	7	1.75
483165--483203	20	1.9	21	85	15	55	48	0	17	33	1.48
484020--484147	62	2.1	61	80	1	139	48	11	10	29	1.72
486322--486391	36	1.9	36	82	5	88	44	10	15	30	1.79
486386--486442	24	2.4	24	96	0	105	47	19	7	26	1.74
486427--486591	33	5.0	33	73	6	113	41	16	13	27	1.87
486515--486732	108	2.0	108	98	0	418	40	15	16	27	1.88
488104--488146	22	1.9	23	85	4	61	51	13	4	30	1.62
488104--488152	22	2.3	22	82	10	57	48	16	4	30	1.64
491890--491928	15	2.6	15	88	12	62	0	10	7	82	0.86
491891--491928	14	2.6	14	95	4	67	0	10	7	81	0.87
492280--492322	15	2.9	15	86	6	52	72	2	9	16	1.21
497422--497460	17	2.3	17	95	0	69	43	30	10	15	1.80
501792--501849	28	2.1	28	90	6	93	34	12	6	46	1.68
502630--502697	31	2.2	31	84	2	84	38	16	7	38	1.76
507092--507159	31	2.2	31	84	2	84	38	19	8	33	1.82

Tables:   1   2   3

The End!