genome.fa.s8149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008149.1 Hibiscus syriacus cultivar Beakdansim tig00110715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174755

Tables:   1   2   

This is table  1  of  2  ( 142 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263--290	8	3.5	8	100	0	56	39	0	10	50	1.37
3755--3805	8	6.5	8	84	11	61	78	0	9	11	0.97
3754--3803	15	3.3	15	85	0	73	76	0	12	12	1.04
4657--4864	52	3.9	52	89	2	281	31	15	26	25	1.96
4642--5061	53	7.9	54	82	10	297	32	16	25	25	1.96
4802--5145	106	3.3	103	79	13	328	32	17	23	27	1.96
4857--5170	51	6.0	51	82	10	314	32	17	24	26	1.96
4804--5221	54	7.9	53	81	8	336	33	17	24	24	1.96
9621--9761	45	3.1	45	78	10	146	23	16	18	41	1.89
10442--10937	82	6.1	82	85	2	504	37	19	16	26	1.93
10442--10993	165	3.4	162	82	4	615	37	19	17	24	1.93
10442--10993	247	2.2	245	81	2	635	37	19	17	24	1.93
10442--10996	82	6.8	82	82	5	458	37	20	17	24	1.93
16784--16841	23	2.5	23	82	0	71	27	10	13	48	1.75
16888--16981	34	3.0	34	72	23	114	19	6	11	62	1.49
16911--16968	26	2.4	24	88	8	82	20	3	12	63	1.42
16921--16979	26	2.3	26	90	0	91	18	5	11	64	1.44
23396--23493	49	2.0	47	96	3	178	27	12	21	38	1.89
27675--28582	215	4.2	216	93	1	1515	50	8	13	28	1.70
28924--29125	2	99.0	2	74	14	155	44	3	1	50	1.29
29061--29107	25	1.9	24	86	4	67	38	6	2	53	1.39
32059--32504	55	8.1	55	93	0	743	27	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33443--33479	18	2.1	18	94	0	65	10	2	0	86	0.67
36991--37018	8	3.5	8	100	0	56	50	10	0	39	1.37
47061--47184	18	6.8	18	75	17	105	41	9	6	41	1.63
47112--47241	38	3.4	38	79	16	137	41	10	6	42	1.63
47125--47267	57	2.4	60	80	12	161	41	9	6	42	1.63
47218--47267	24	2.1	24	85	7	66	38	8	10	44	1.68
47163--47282	57	2.1	57	81	6	136	41	8	7	42	1.63
47275--47702	2	208.5	2	63	25	96	45	6	3	44	1.46
47275--47702	7	69.5	6	66	23	96	45	6	3	44	1.46
47275--47702	9	52.1	8	66	22	96	45	6	3	44	1.46
47282--47513	22	10.2	22	70	16	109	45	6	2	45	1.41
47473--47703	18	13.3	18	72	16	184	45	6	3	44	1.46
47496--47691	33	5.8	32	73	10	142	44	6	4	44	1.49
47546--47737	86	2.2	84	87	4	269	45	6	4	42	1.51
47634--47734	51	2.0	51	90	3	159	46	6	5	40	1.55
48257--48469	102	2.1	103	86	6	299	34	29	4	31	1.78
48605--48661	12	4.8	12	76	4	53	45	42	8	3	1.52
48635--48687	18	2.9	18	82	0	61	35	41	16	5	1.73
48684--48718	18	1.9	18	88	0	52	37	48	5	8	1.58
48804--48840	17	2.1	17	90	5	56	10	2	0	86	0.67
48942--48988	2	23.5	2	100	0	94	48	0	0	51	1.00
48999--49118	63	1.9	62	91	3	197	34	10	14	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50612--50650	20	2.0	20	84	0	51	12	17	17	51	1.76
55556--55604	16	3.0	16	87	3	62	44	18	12	24	1.84
55583--55635	21	2.5	22	82	8	58	30	24	20	24	1.99
56511--56569	21	2.8	21	92	0	100	25	11	16	45	1.82
56514--56579	21	3.2	21	89	2	98	25	13	19	40	1.89
56572--56606	13	2.6	14	90	4	54	25	17	34	22	1.96
57740--57808	18	3.8	18	84	7	88	47	7	15	28	1.72
57952--58026	38	2.0	37	84	5	98	48	2	1	48	1.24
59088--59112	4	6.2	4	100	0	50	76	0	0	24	0.80
59487--59559	33	2.2	33	90	0	110	26	9	20	43	1.82
59605--59668	20	3.0	21	78	19	62	70	0	0	29	0.88
59982--60889	84	11.0	83	79	5	824	25	20	24	29	1.99
59982--60768	249	3.2	247	81	4	935	25	20	24	29	1.99
59982--60889	165	5.5	164	84	3	1160	25	20	24	29	1.99
59982--60889	333	2.7	330	85	3	1229	25	20	24	29	1.99
64287--64331	19	2.4	19	88	0	72	64	11	13	11	1.50
66833--66868	18	1.9	19	88	5	56	5	5	27	61	1.41
67287--67365	19	4.0	19	76	19	56	72	0	2	25	0.98
67286--67364	24	3.2	24	79	16	83	73	0	2	24	0.96
67285--67362	11	7.4	10	71	18	52	74	0	2	23	0.94
67291--67362	32	2.2	33	83	11	96	73	0	2	23	0.96
67380--67902	37	14.4	37	72	15	292	43	5	4	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67379--67459	39	2.0	41	81	9	96	43	3	3	49	1.38
67423--67522	29	3.2	30	74	16	78	43	6	8	43	1.58
67462--67902	73	6.0	73	87	6	554	43	5	4	45	1.47
67468--67902	37	11.9	36	82	7	470	44	5	4	45	1.48
67886--67910	2	12.5	2	100	0	50	48	0	0	52	1.00
68812--68876	31	2.1	31	88	0	94	41	10	21	26	1.86
71054--71113	30	2.0	30	93	0	102	25	21	13	40	1.89
72362--72533	57	2.9	59	86	8	226	40	12	15	31	1.84
76876--76988	60	1.9	60	83	7	149	32	16	15	35	1.90
78695--78836	57	2.4	57	78	9	144	35	19	4	41	1.70
79642--79690	11	3.8	13	79	17	57	46	2	2	48	1.25
83339--83439	48	2.1	48	90	0	166	30	18	18	31	1.96
84066--84114	20	2.5	20	89	0	71	46	8	4	40	1.52
83977--84096	2	61.5	2	70	17	83	49	3	1	45	1.28
84191--84232	22	1.9	22	100	0	84	45	0	4	50	1.23
92208--92266	23	2.6	23	83	0	73	27	10	25	37	1.88
92844--92890	19	2.5	19	89	3	69	61	0	6	31	1.21
92845--92937	18	5.1	17	75	13	78	59	3	3	34	1.30
95565--95630	26	2.6	25	83	4	78	27	36	9	27	1.87
96819--96858	19	2.1	19	90	4	62	32	0	0	67	0.91
100238--100346	21	5.0	21	72	12	78	24	19	24	31	1.98
100259--100340	22	3.7	22	78	3	85	21	19	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100255--100345	21	4.2	22	71	12	80	26	19	24	29	1.98
102867--102902	18	2.0	18	100	0	72	44	27	11	16	1.82
107077--107176	21	4.8	21	92	2	148	23	13	28	36	1.92
107162--107244	22	3.8	22	76	13	82	20	21	26	31	1.98
107162--107213	23	2.3	23	90	3	79	21	21	26	30	1.98
107141--107248	21	5.0	22	74	17	84	24	20	25	29	1.99
115656--116223	258	2.2	258	88	2	847	31	16	18	33	1.93
116363--116400	3	13.0	3	84	15	53	34	0	0	65	0.93
117912--117979	23	2.9	24	82	4	93	25	20	23	30	1.98
117912--117971	24	2.5	24	86	2	68	23	21	21	33	1.97
124792--124881	23	3.8	24	82	7	114	24	17	26	31	1.97
124792--124897	23	4.7	23	81	9	112	22	16	27	33	1.96
124811--124908	23	4.4	21	79	13	83	24	17	25	32	1.97
130228--130278	9	5.2	10	79	11	61	17	23	29	29	1.97
130213--130266	10	5.7	9	79	12	54	18	24	27	29	1.98
130212--130266	19	2.8	19	88	2	74	20	23	27	29	1.99
130229--130282	19	2.9	18	86	13	74	18	25	29	25	1.98
130276--130333	17	3.4	17	95	0	98	15	43	25	15	1.86
137503--137554	19	2.7	19	87	3	68	19	25	28	26	1.98
137503--137552	10	5.1	10	74	13	50	20	22	30	28	1.98
137548--137605	17	3.4	17	92	0	98	18	41	24	15	1.89
137595--137631	7	5.4	7	93	6	67	16	29	29	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137595--137627	13	2.5	13	95	5	57	15	30	30	24	1.95
142444--142484	17	2.4	17	100	0	82	31	4	7	56	1.48
143473--143681	20	10.5	20	79	9	123	35	25	15	22	1.94
143571--143695	40	3.1	39	76	17	139	40	21	16	20	1.91
143550--143681	60	2.2	61	86	4	178	37	23	16	21	1.93
143571--143695	20	6.2	20	75	15	100	40	21	16	20	1.91
143829--143871	22	2.0	22	95	0	77	25	44	13	16	1.85
144131--144171	20	2.1	20	90	4	66	46	24	19	9	1.80
146332--146406	21	3.6	21	81	0	87	25	36	14	24	1.93
147965--148025	20	3.0	20	92	2	104	40	22	19	16	1.90

Tables:   1   2