Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008151.1 Hibiscus syriacus cultivar Beakdansim tig00110717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219606

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160002--160044
18
2.4
17
81
11
50
76
0
6
16
0.99
160083--160111
2
14.5
2
100
0
58
51
0
0
48
1.00
160374--160400
2
13.5
2
100
0
54
51
0
0
48
1.00
160507--160561
2
27.5
2
100
0
110
50
0
0
49
1.00
160559--160601
18
2.5
17
81
7
52
69
2
2
25
1.12
160561--160599
14
2.8
13
88
11
51
71
2
2
23
1.10
161654--161697
23
2.0
21
86
8
61
75
0
0
25
0.81
162688--162998
43
7.3
43
79
5
263
28
20
22
27
1.99
162714--162998
86
3.3
86
86
4
344
27
20
23
29
1.99
162707--162998
128
2.3
129
81
3
338
27
20
22
29
1.99
162945--163039
43
2.2
43
81
7
104
34
21
18
25
1.96
163904--164050
74
2.0
74
98
0
285
48
12
10
28
1.73
185201--185225
6
4.2
6
100
0
50
0
32
0
68
0.90
185543--185581
21
1.9
20
84
5
51
53
2
30
12
1.52
189639--189681
3
14.7
3
85
4
61
37
0
2
60
1.10
191582--191618
2
18.5
2
100
0
74
48
0
0
51
1.00
191607--191825
97
2.2
99
91
4
356
29
7
11
51
1.66
191609--191825
49
4.4
49
90
5
341
29
7
11
51
1.66
191709--192060
181
1.9
185
87
4
525
29
7
13
50
1.68
191891--191999
49
2.2
49
95
3
193
29
5
10
55
1.56
192181--192226
24
1.9
24
100
0
92
39
4
6
50
1.48
203951--204047
31
3.0
32
80
10
117
77
1
12
9
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204918--205255
136
2.5
136
91
3
544
34
17
22
25
1.95
205204--205288
35
2.4
35
100
0
170
43
12
22
21
1.86
205235--205469
105
2.2
105
97
0
445
40
16
19
24
1.91
205640--205682
3
14.7
3
85
4
61
37
0
2
60
1.10
207018--207050
15
2.2
16
89
10
52
27
0
3
69
1.03
207598--207626
2
14.5
2
100
0
58
48
0
0
51
1.00
207615--207849
100
2.4
100
91
2
393
29
7
12
50
1.67
207617--207836
49
4.4
49
94
2
368
29
7
11
51
1.66
207902--208024
55
2.2
56
90
8
207
30
4
8
56
1.51
207902--208030
53
2.4
54
93
2
215
30
4
9
55
1.52
208201--208246
24
1.9
24
100
0
92
39
4
6
50
1.48
213290--213318
2
14.5
2
100
0
58
48
0
0
51
1.00
213331--213392
28
2.2
29
77
16
67
17
8
0
74
1.06
217096--218370
105
12.2
106
90
2
1941
33
25
17
23
1.96
217096--218370
313
4.1
314
92
2
1958
33
25
17
23
1.96
218592--218966
81
4.5
83
81
5
307
29
26
19
24
1.99
218582--218966
85
4.7
83
82
3
395
29
25
19
24
1.98
218671--219012
84
4.1
80
81
7
290
29
25
20
24
1.99

Tables:   1   2

The End!