genome.fa.s8158.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008158.1 Hibiscus syriacus cultivar Beakdansim tig00110725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  344415

Tables:   1   2   

This is table  2  of  2  ( 202 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171592--171616	12	2.1	12	100	0	50	56	0	0	44	0.99
173213--173253	2	20.5	2	100	0	82	48	0	0	51	1.00
173341--173402	2	31.0	2	100	0	124	50	0	0	50	1.00
175284--175328	17	2.7	17	72	27	51	22	2	2	73	1.05
178344--178409	7	9.4	7	76	20	59	83	1	13	1	0.79
178354--178403	5	9.8	5	81	12	57	84	2	12	2	0.80
178354--178403	16	3.3	15	86	10	66	84	2	12	2	0.80
178337--178416	35	2.3	36	85	8	103	80	3	15	1	0.92
178344--178409	11	6.0	11	78	7	71	83	1	13	1	0.79
178359--178409	21	2.4	22	87	9	70	84	1	11	1	0.79
178344--178398	16	3.2	16	77	10	56	83	1	12	1	0.80
178344--178418	11	6.7	11	82	15	66	81	2	14	1	0.87
178354--178431	32	2.4	32	80	4	86	79	3	14	2	0.98
180620--181392	106	7.3	106	93	1	1265	33	24	17	23	1.96
185120--185170	20	2.5	20	93	0	93	27	17	29	25	1.98
185838--185946	23	4.7	23	78	6	121	19	27	23	29	1.98
190814--190909	41	2.3	41	90	0	156	36	14	10	38	1.81
190820--190888	22	3.3	22	63	19	56	37	11	11	39	1.78
191940--192054	51	2.3	51	84	3	142	47	9	4	38	1.56
193314--193367	27	2.0	27	81	0	63	14	27	18	38	1.90
196757--197229	235	2.0	234	98	0	919	39	12	11	36	1.80
197349--197433	31	2.7	31	82	7	93	40	4	8	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198605--198753	77	1.9	79	87	2	221	46	6	9	38	1.61
204164--204193	16	1.9	15	93	6	51	53	13	13	20	1.72
205084--205242	77	2.0	79	83	4	198	44	5	11	38	1.62
205879--206121	134	1.8	130	82	10	314	46	6	9	37	1.63
207673--207732	3	19.3	3	79	6	66	63	0	1	35	1.05
207673--207732	28	2.1	28	84	6	77	63	0	1	35	1.05
207674--207732	13	4.5	13	80	17	59	64	0	1	33	1.04
207891--208477	73	8.0	73	92	1	953	33	20	18	27	1.96
207891--208477	145	4.0	146	91	1	953	33	20	18	27	1.96
209131--209204	22	3.4	22	88	0	103	31	12	17	39	1.86
216105--216144	21	1.9	21	85	10	55	32	0	7	60	1.25
219230--219268	4	9.5	4	88	5	51	30	0	2	66	1.05
219217--219268	25	2.1	25	88	0	77	38	0	3	57	1.17
219228--219275	25	1.9	25	91	0	78	33	0	6	60	1.22
219624--219667	2	22.0	2	100	0	88	50	0	0	50	1.00
221041--221100	3	19.3	3	79	6	66	63	0	1	35	1.05
221041--221100	28	2.1	28	84	6	77	63	0	1	35	1.05
221042--221100	13	4.5	13	80	17	59	64	0	1	33	1.04
229800--229854	20	2.8	20	91	0	83	27	1	25	45	1.64
231433--231497	29	2.3	29	86	2	87	40	6	6	47	1.53
232059--232210	76	2.0	76	96	0	277	38	11	18	30	1.87
234822--234846	10	2.5	10	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242506--242544	15	2.6	15	95	0	69	56	17	7	17	1.64
243983--244034	11	5.1	10	79	6	52	80	0	15	3	0.85
243985--244027	19	2.3	19	88	8	61	79	0	16	4	0.90
243982--244034	9	5.4	9	76	14	52	79	0	16	3	0.88
247571--247617	2	24.0	2	95	4	87	48	0	0	51	1.00
251377--251600	122	1.8	123	92	0	378	19	25	14	40	1.90
253450--253597	45	3.3	44	77	4	152	41	12	10	35	1.77
253836--253865	13	2.2	14	94	5	53	50	13	0	36	1.42
255486--255537	19	2.7	18	85	8	59	40	0	5	53	1.25
255486--255540	17	3.0	18	84	7	67	43	0	5	50	1.25
264831--264867	19	1.9	19	88	0	56	45	0	8	45	1.32
264871--264917	22	2.2	23	81	14	64	48	0	0	51	1.00
273491--273541	22	2.4	21	90	3	75	9	17	3	68	1.33
276875--277603	134	5.5	133	79	6	647	30	19	19	31	1.96
277074--277595	268	1.9	271	85	4	716	31	18	20	29	1.96
279067--279173	42	2.6	41	77	2	115	29	20	21	28	1.98
278648--279284	259	2.5	258	86	1	848	33	17	15	33	1.91
279203--279345	61	2.3	61	97	2	270	36	13	7	41	1.74
278960--279603	319	2.0	320	88	3	949	33	17	15	34	1.90
279658--279749	42	2.2	41	88	1	130	32	20	20	26	1.97
279264--279751	257	1.9	258	88	3	743	33	17	16	33	1.92
292434--292512	24	3.5	22	79	8	79	53	12	7	26	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295157--295218	22	2.8	23	85	4	74	24	16	17	41	1.89
296045--296245	58	3.5	57	76	10	187	38	7	12	41	1.72
300028--300052	2	12.5	2	100	0	50	52	0	48	0	1.00
300161--300196	18	2.0	18	94	0	63	16	0	52	30	1.44
302201--302407	64	3.2	64	89	4	276	27	17	20	33	1.96
305575--305635	31	2.0	31	87	6	88	39	19	19	21	1.93
306293--306499	64	3.2	64	89	4	276	27	17	20	33	1.96
309667--309727	31	2.0	31	87	6	88	39	19	19	21	1.93
310385--310605	64	3.5	64	85	3	259	28	18	19	33	1.95
318300--318354	26	2.1	26	96	0	101	40	16	25	18	1.91
320550--320584	17	1.9	19	88	11	56	31	8	34	25	1.86
336048--336170	25	5.0	25	93	5	207	27	14	21	36	1.92
336497--336704	87	2.4	89	87	3	287	24	18	30	26	1.98
336556--336694	46	3.2	42	71	17	115	25	18	30	25	1.98
336472--336706	43	5.4	43	69	15	158	24	18	31	26	1.98
337756--337792	8	4.5	8	86	6	56	10	13	0	75	1.04

Tables:   1   2

The End!