genome.fa.s8160.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008160.1 Hibiscus syriacus cultivar Beakdansim tig00110729_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1466564

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 773 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742550--742643	46	2.1	45	85	2	125	37	9	26	26	1.87
747743--747823	35	2.3	35	100	0	162	25	3	20	49	1.66
748078--748128	3	16.7	3	88	11	77	68	0	0	31	0.90
748159--748773	98	6.2	100	86	6	847	40	10	10	38	1.74
748159--748773	200	3.1	202	88	4	894	40	10	10	38	1.74
748159--748772	298	2.1	297	88	3	901	41	10	10	38	1.73
749900--750146	129	1.9	130	91	0	406	36	13	14	35	1.86
750541--750616	35	2.2	35	92	0	125	35	1	23	39	1.63
755292--755344	3	17.3	3	80	3	61	56	0	0	43	0.99
755466--755852	47	8.3	47	93	2	629	33	18	21	26	1.97
755466--755852	93	4.1	94	91	2	629	33	18	21	26	1.97
755687--756127	177	2.5	173	89	2	670	30	20	22	26	1.98
755860--755991	45	2.9	47	83	4	178	26	21	26	25	2.00
756791--756870	22	3.6	24	77	13	73	38	11	15	35	1.83
760796--760996	72	2.7	73	85	4	253	34	18	19	27	1.95
762380--762412	16	2.1	16	100	0	66	24	12	24	39	1.89
765025--765064	20	2.0	20	90	4	64	85	5	0	10	0.75
766108--766146	2	19.5	2	100	0	78	51	0	0	48	1.00
766358--766443	23	3.7	23	72	18	70	62	1	3	32	1.19
766366--766424	26	2.4	24	83	11	66	64	0	3	32	1.10
766401--766443	21	2.0	21	83	16	54	62	0	4	32	1.15
766417--766467	16	3.2	15	78	15	50	66	0	5	27	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774726--774785	27	2.2	27	78	0	66	30	23	20	26	1.98
777854--777916	19	3.2	19	75	4	54	55	12	0	31	1.37
781038--781119	40	2.0	40	100	0	164	32	26	17	23	1.96
787029--787071	16	2.9	15	86	10	54	62	0	2	34	1.08
788307--788389	42	2.0	42	85	0	112	37	13	8	40	1.75
788773--788895	11	11.2	11	66	19	69	39	4	0	56	1.21
788756--788937	33	5.6	33	97	2	334	40	6	0	52	1.32
794413--794529	45	2.7	44	69	11	98	28	21	17	32	1.96
794560--794915	66	5.4	66	93	0	579	33	16	20	29	1.95
796094--796160	16	4.4	15	81	17	68	5	14	1	77	1.03
803006--803035	11	2.7	11	89	0	51	50	10	16	23	1.75
812439--812470	10	3.2	10	100	0	64	37	21	9	31	1.85
813130--813186	15	3.9	15	86	2	80	38	5	19	36	1.74
813124--813195	30	2.4	30	95	2	128	43	4	19	33	1.70
813418--813447	10	3.0	10	95	0	51	56	0	0	43	0.99
813471--813533	23	2.7	23	85	5	72	47	0	1	50	1.10
813493--813533	12	3.4	12	81	18	50	46	0	0	53	1.00
813509--813584	19	4.0	19	72	12	59	46	1	0	52	1.08
813626--813691	34	2.0	34	85	14	93	51	1	0	46	1.10
813868--813979	42	2.7	42	94	1	190	47	16	18	16	1.83
814294--814950	261	2.5	262	88	0	1001	27	18	16	37	1.92
820617--820648	14	2.1	16	88	11	50	50	18	15	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822443--822795	182	2.0	179	93	1	598	50	4	5	39	1.47
828567--828609	20	2.2	20	86	0	59	32	13	18	34	1.90
836306--836342	19	1.9	19	88	0	56	16	18	0	64	1.29
847331--847372	2	21.0	2	100	0	84	50	0	0	50	1.00
849390--849458	28	2.5	28	88	9	97	30	8	4	56	1.49
849390--849479	28	3.2	28	80	4	92	27	7	5	58	1.48
849721--849749	2	14.5	2	100	0	58	48	0	0	51	1.00
856324--856361	14	2.7	14	95	0	67	21	39	28	10	1.86
856350--856399	10	5.0	10	77	18	59	24	38	28	10	1.87
856350--856399	20	2.5	20	96	0	91	24	38	28	10	1.87
856381--856452	33	2.2	33	79	0	81	27	23	34	13	1.93
860509--860574	34	1.9	34	84	0	87	28	3	4	63	1.29
861554--861607	23	2.5	21	75	13	56	33	25	24	16	1.96
864302--864390	6	14.8	6	100	0	178	15	33	0	50	1.45
868009--868046	15	2.5	15	100	0	76	42	5	28	23	1.76
869371--869446	36	2.1	36	85	7	100	47	1	3	47	1.29
869590--869627	20	1.9	20	88	0	58	21	26	10	42	1.85
872700--872781	23	3.8	22	84	6	96	23	32	25	18	1.97
880564--880676	56	2.0	56	98	0	217	29	5	18	46	1.71
889452--889512	20	2.9	21	87	7	79	18	26	34	21	1.96
896682--896735	26	2.0	26	89	7	81	55	1	0	42	1.10
902659--902752	46	2.0	47	89	4	145	37	7	7	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902744--902818	29	2.6	28	85	6	96	32	8	10	49	1.66
903465--903514	23	2.2	22	82	6	64	80	4	2	14	0.95
905168--905300	43	3.1	42	81	6	151	36	12	24	26	1.90
905458--905874	158	2.6	160	83	6	495	31	18	16	34	1.93
905458--905891	41	10.8	41	76	10	380	30	19	16	33	1.94
914265--914362	43	2.2	44	80	3	117	33	19	18	28	1.95
914743--914820	37	2.1	37	95	0	138	19	28	19	33	1.96
915616--915648	16	2.1	16	100	0	66	30	12	36	21	1.90
918485--918515	15	2.1	15	100	0	62	32	25	0	41	1.56
920873--920951	32	2.5	31	73	16	83	46	1	11	40	1.48
920910--920964	28	2.0	28	88	0	83	45	3	9	41	1.53
921069--921152	3	27.3	3	74	13	64	32	1	3	63	1.19
921071--921153	10	8.2	10	71	18	57	31	1	3	63	1.19
922874--922912	20	1.9	21	89	5	62	23	7	5	64	1.40
941896--942459	39	14.5	39	87	2	794	34	15	17	32	1.91
941896--942459	235	2.4	234	88	2	846	34	15	17	32	1.91
950979--951184	25	8.2	25	82	0	241	31	22	17	28	1.97
952759--952808	26	2.0	26	84	4	66	44	10	8	38	1.68
956608--956636	2	14.5	2	100	0	58	48	0	0	51	1.00
957664--957706	2	21.5	2	100	0	86	51	0	0	48	1.00
957866--957917	24	2.2	24	82	0	59	50	17	11	21	1.77
957889--958007	24	5.0	24	83	4	141	41	17	15	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960504--960555	15	3.3	15	86	8	68	25	25	32	17	1.97
960494--960555	8	7.5	8	78	14	56	25	24	32	17	1.97
960542--960573	13	2.5	13	100	0	64	18	25	40	15	1.90
960552--960596	18	2.5	18	89	7	65	13	20	46	20	1.83
963316--963395	39	2.1	39	97	0	151	28	11	0	60	1.31
964529--964555	14	1.9	14	100	0	54	22	14	25	37	1.93
965092--965196	36	2.9	36	83	5	131	23	48	5	21	1.71
965114--965328	45	5.1	42	84	9	264	21	48	8	20	1.76
965170--965346	90	2.0	86	84	4	228	22	49	9	18	1.76
968905--969013	35	3.1	35	87	0	146	37	0	20	41	1.59
975268--975335	3	22.0	3	73	11	57	57	2	0	39	1.14
975306--975341	18	2.0	18	94	0	63	58	0	0	41	0.98
975467--976408	76	12.4	76	96	0	1674	35	21	21	21	1.96
977083--977137	22	2.5	22	90	0	92	38	14	12	34	1.84
987926--987953	13	2.2	13	100	0	56	7	64	28	0	1.20
988728--988795	3	22.0	3	73	11	57	57	2	0	39	1.14
988766--988801	18	2.0	18	94	0	63	58	0	0	41	0.98
990532--990560	14	2.1	14	100	0	58	41	13	13	31	1.84
992408--992510	51	2.0	51	86	3	145	50	14	15	19	1.78
993380--993426	20	2.4	19	89	10	76	55	10	17	17	1.69
993168--993640	181	2.6	182	90	1	716	42	13	17	26	1.86
993561--993607	20	2.4	19	82	10	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993570--993612	20	2.3	19	88	11	63	51	11	16	20	1.75
995810--995853	21	2.1	21	91	0	70	40	11	31	15	1.83
995887--995952	33	2.0	33	90	0	105	28	0	48	22	1.51
997740--997788	19	2.6	19	93	0	80	30	2	10	57	1.43
997907--999080	200	5.9	200	96	0	2131	36	14	17	31	1.90
1000544--1000637	6	15.7	6	81	0	80	38	7	32	21	1.81
1000544--1000625	36	2.3	36	91	0	128	37	8	32	20	1.83
1000561--1000641	9	9.0	9	77	0	81	37	6	33	23	1.80
1000544--1000637	12	7.8	12	85	0	98	38	7	32	21	1.81
1001836--1001869	16	2.1	16	94	0	59	47	5	20	26	1.73

Tables:   1   2   3   4   5   6   7